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EMAGE:21657

Trmt61a tRNA methyltransferase 61 homolog A (S. cerevisiae) ( MGI:2443487)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:21657
euxassay_005668_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:21657Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
21657_wholemount_strong.wlz
21657_wholemount_moderate.wlz
21657_wholemount_weak.wlz
21657_wholemount_possible.wlz
21657_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:21657_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T5551
Entity Detected:Trmt61a, tRNA methyltransferase 61 homolog A (S. cerevisiae) ( MGI:2443487)
Sequence:sense strand is shown

>T5551
GGTTATGCTGCGTGAGTTTCCGAGCTGGGAGCGGCGCTCCGGGCTTGCTGGCAGGTCCCGTGCTGTTCGG
CGGGAGGCCAGCCTTCCCTGCCGTCGGGAGCCCTCCGTGGAGACTCTGGGCAAGGGGCTACGGGGATTCC
GGGCTCGGAGGTGGCTTCTCTCCCCTGCTGTGCACGCTATCAGAGGCTGCCGCCTTCACACTAGGGGATT
CTGGTTCTTCATGTGTGGGAATCCTTGGGCTCCTGTCGCTGTGCACTCTCTTGTGTACTCCGAGAATAGA
GACCTCCAGAAGGGCTCCATATGTTAGGCTAGAGTGCAGCTCTGTTGGGTTGGCTAAGCAAGTCCGCTAA
CCCTGCTCAGAACCCAGGCCCCACAGACCTCTCTGTCCAGACCACAGATCTTCATCCTGCCTCCTGGTCC
TCTGACCTCACGTCCACACACCACTTCTCCAGGTCCCTGACCCTTGGCAAACGTTAACACCATGAGTTTC
GTGGCATACGAGGAGCTGATCAAGGAAGGCGACACAGCCATCCTGTCACTGGGGCACGGCTCGATGGTAG
CAGTGCGTGTGCAGCGTGGGGCACAGACCCAGACCCGGCATGGCGTCCTGAGGCACTCGGTGGACCTCAT
TGGCCGCCCATTTGGCTCCAAGGTGATTTGCAGCAGAGGCGGCTGGGTGTATGTGCTGCACCCCACTCCT
GAGCTCTGGACAGTGAACCTGCCCCACCGCACGCAGATCCTCTACTCCACCGACATTGCCTTGATCACCA
TGATGCTGGAGCTGCGTCCCGGTTCTGTGGTCTGTGAATCAGGCACGGGCAGTGGTTCTGTATCCCACGC
AATCATCCGCAGCGTTGCCCCCACTGGCCACCTACACACAGTAGAGTTCCACCAGCAACGGGCGGACAAG
GCCCGGGAGGAATTCCAGGAGCATCGGCTGAGCCAGTGGGTGACTGTGCACACCCAGGATGTGTGCTGCA
GTGGCTTCGGTGTGGTCCACGTGGCTGACGCTGTCTTCTTGGATATCCCATCACCCTGGGAAGCTGTGGG
CCATGCCTGGGATGCCCTCAAGGTTGAAGGTGGGCGTTTCTGCTCCTTCTCTCCGTGCATTGAGCAGGTG
CAGCGGACATGCCAGGCGCTGGCAGCCCATGGCTTCACAGAGCTTAGCACCCTGGAGGTACTGCCACAGG
TCTACAATGTGCGCACTGTCAGTCTGCCCTTGCCCGACCTGGGGGCCAACAACTTAGAGACCAACATGGG
CTCTGATGCCAGCCCCTTCCGTAGTGGCACACCCATGAAGGAGACTGTGGGCCACACTGGCTACCTGACT
TTTGCCACTAAAACCCCAGGCTAGCAGGCCTCCAAATGAACAGCACAGGCAAGCAGGCAGGGAGGCCAGA
GGCTGCCTTATATGGTCAGCCACTGCCCTCGTGGCTTGTGTTTAGAAAGAGATGGGGGCGGGGTGGGGCA
GGGGCCTCCTGGGTGGCTGAGGGGGGTGAGTAGGCTGGCCCTGCTCAGCTGGGAGGCATTCCTGTCTTCT
GAGAGGGAAGTCTCCACTTCATCACTGCTCAGCGCAAGCTCTGTCCTGGCTCTTTGTTGTCAACATGAGT
CTTTCCTCTCCATAGTCCTTCCTGGGTTTTGAGACTAAATGGTAAAAGTTGAGGGCGTCGGAAGCTTTGG
GCACTGCCTATAGCCTGGGCTGACCTACGGGAGCGTGGGTTGTCCCATCCCTGGCGCAAGTCTCCAGGCC
CTGGTGCTCCAGAGCTTAGCCAGAAGCTGTGGTTGAGCTAAATTAACCAGAAAGCCCAGCCCTGCCCTCC
TCTCCCTATACTTCCCTAAGGCTGATGGAGGGACCAGGCTGGCCCAGGAACAAAGGAGGTGATGATAATC
AATAATCATGTGCTGCACAGGCCACGTGTGTGTCAGCACGACCGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGAGTTCCTGGTGTGCTGGTGTGCTGT
CATCTGGGGTTAGGCATCATCCTGAGGGATAGAACACAGCAGGATTGGTCCCTGCTTCCGTGACCTTCCA
GTCCTTGTTGGAGCTGGGGTCAAAGCGGATCATAGAGGAGCCTGTGCATGGGCTAAGAGCCTGGCTGTGG
ACTTGCCACATGTGTCCCCTTGGCCTGGTGTCCATTCTCGGTATGTGGCTAGCTTCAAGGGAGTTTCAGT
GCTCGGTGCTCAGATCATCTTGGTGTGAGGCTGCCAGTCAGCTGCTGCTGCTGCGTGGAAGCAGCCATCG
CGAGACTCACCAGTGTCCTACTGTCATATGTCATACCCGAGGGCACCCAAAGGATAATAAATATTTTCCC
CACTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:6468754 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6468754 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_005668 same experiment
 EMAGE:21655 same embryo
 EMAGE:21654 same embryo
 EMAGE:21656 same embryo
 EMAGE:21653 same embryo
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS