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EMAGE:30916

Apex1 ( MGI:88042)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:30916 EMAGE:30916 EMAGE:30916 EMAGE:30916 EMAGE:30916
euxassay_005116_01 euxassay_005116_02 euxassay_005116_03 euxassay_005116_04 euxassay_005116_05
EMAGE:30916 EMAGE:30916 EMAGE:30916 EMAGE:30916 EMAGE:30916
euxassay_005116_06 euxassay_005116_07 euxassay_005116_08 euxassay_005116_09 euxassay_005116_10
EMAGE:30916 EMAGE:30916 EMAGE:30916 EMAGE:30916 EMAGE:30916
euxassay_005116_11 euxassay_005116_12 euxassay_005116_13 euxassay_005116_14 euxassay_005116_15
EMAGE:30916 EMAGE:30916 EMAGE:30916 EMAGE:30916 EMAGE:30916
euxassay_005116_16 euxassay_005116_17 euxassay_005116_18 euxassay_005116_19 euxassay_005116_20
EMAGE:30916 EMAGE:30916 EMAGE:30916
euxassay_005116_21 euxassay_005116_22 euxassay_005116_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Text Annotation:
StructureLevelPatternNotes
sternum
strong strong
regionalstrong expression: see section 12 14 15
vestibulocochlear viii ganglion
moderate moderate
regionalmoderate expression: see section 04 05 06 07 08 16 17 18 19 20 21
metanephros
strong strong
regionalstrong expression: see section 05 06 07 08 09 15 16 17 18
cervico-thoracic ganglion
moderate moderate
regionalmoderate expression: see section 08 14
spinal cord
strong strong
regionalstrong expression: see section 08 09 10 11 12 13 14 not examined expression: see section 07
rectum
moderate moderate
regionalmoderate expression: see section 12
thoracic ganglion
moderate moderate
regionalmoderate expression: see section 10 11 12 13 14
testis
strong strong
spottedstrong expression: see section 04 05 06 17 18 19 20
pancreas
strong strong
regionalstrong expression: see section 08 09 13 14
lower jaw molar
strong strong
regionalstrong expression: see section 06 07 08 09 16 17 18
pharyngo-tympanic tube
strong strong
regionalstrong expression: see section 01 02 21 22 23
upper jaw molar
strong strong
regionalstrong expression: see section 06 07 08 09 16 17 18
vertebral axis musculature
strong strong
regionalstrong expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23
thymus primordium
strong strong
regionalstrong expression: see section 10 11 12 13 14
trigeminal v ganglion
moderate moderate
regionalmoderate expression: see section 03 04 05 06 07 08 16 17 18 19 20 21
nasal cavity respiratory epithelium
strong strong
regionalstrong expression: see section 10 11 14 15 16 17 moderate expression: see section 12
vibrissa
strong strong
regionalstrong expression: see section 05 06 07 08 20 moderate expression: see section 03 04 18 19 21 22
nasal cavity olfactory epithelium
strong strong
regionalstrong expression: see section 07 08 09 10 11 13 14 15 16 17 18
hindgut
strong strong
regionalstrong expression: see section 13
cervical ganglion
moderate moderate
regionalmoderate expression: see section 07 15 16
naris
strong strong
regionalstrong expression: see section 10 15 16
hand
moderate moderate
regionalmoderate expression: see section 21 22 23
orbito-sphenoid
strong strong
regionalstrong expression: see section 01 02 03 04 05 20 21 22 23
mandible
strong strong
regionalstrong expression: see section 01 02 03 04 05 06 07 08 09 10 11 13 14 15 16 17 18 19 20 21 22 23
stomach
moderate moderate
regionalmoderate expression: see section 01 02 03 04 05 06 07 08 09
brain
strong strong
regionalstrong expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23
glossopharyngeal ix ganglion
moderate moderate
regionalmoderate expression: see section 06 17 18
retina
strong strong
regionalstrong expression: see section 01 02 03 22 23
midgut
strong strong
regionalstrong expression: see section 10 11 13 14 15 16 17 18 19 moderate expression: see section 12
thyroid gland
strong strong
regionalstrong expression: see section 10 13 14
dorsal root ganglion
moderate moderate
regionalmoderate expression: see section 07 08 09 15 16
foot
moderate moderate
regionalmoderate expression: see section 08 17 18 19
adenohypophysis
moderate moderate
regionalmoderate expression: see section 10 11 12 13 14
submandibular gland primordium
strong strong
regionalstrong expression: see section 06 07 08 15 16 17 18
naso-lacrimal duct
strong strong
regionalstrong expression: see section 05 06 07 08 09 17 18 19 20 moderate expression: see section 03 04
liver
strong strong
regionalstrong expression: see section 09 10 11 12 moderate expression: see section 01 02 03 04 05 06 07 08 13 14 15 16 17 18 19 20 21 22
lower jaw incisor
strong strong
regionalstrong expression: see section 10 11 14 15
upper jaw incisor
strong strong
regionalstrong expression: see section 10 11 14 15
lung
strong strong
regionalstrong expression: see section 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21
Annotation Validation: text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T8583
Entity Detected:Apex1, ( MGI:88042)
Sequence:sense strand is shown

>T8583
AACAGGCAGACTCCATTCTTTGTGCCGTGAGGGTCTCTGGCTTCGTTGGGAGGCAGCGCAGTAAACACTG
CTTCGGTGCTCCAGGAGCCTAAGGGCTTTCGTCACAGCGATGCCAAAGCGGGGAAAGAAAGCGGCGGCCG
ACGACGGGGAAGAACCCAAGTCGGAGCCAGAGACCAAGAAGAGTAAGGGGGCAGCAAAGAAAACCGAGAA
GGAGGCCGCGGGAGAGGGCCCTGTCCTGTACGAGGACCCTCCAGATCAGAAAACCTCACCCAGTGGCAAA
TCTGCCACACTCAAGATATGCTCCTGGAATGTGGATGGGCTTCGAGCCTGGATTAAAAAGAAAGGTTTGG
ATTGGGTAAAGGAAGAAGCACCAGATATCTTGTGCCTCCAAGAGACCAAGTGCTCGGAGAACAAACTCCC
GGCTGAACTGCAAGAGCTGCCTGGACTCACCCATCAGTACTGGTCAGCTCCGTCAGACAAAGAAGGATAC
AGTGGTGTGGGCCTACTTTCCCGCCAGTGCCCGCTAAAAGTCTCTTATGGCATTGGCGAGGAAGAACATG
ATCAAGAAGGCCGGGTGATTGTGGCTGAATTTGAGTCCTTTGTCCTGGTAACAGCCTATGTTCCCAATGC
AGGCAGGGGTCTGGTAAGACTGGAATACCGACAGCGTTGGGATGAAGCCTTCCGAAAGTTTCTAAAGGAC
TTGGCTTCCAGAAAGCCTCTTGTGCTATGTGGGGATCTCAATGTGGCTCATGAAGAAATTGACCTCCGTA
ACCCCAAAGGAAACAAAAAGAATGCTGGCTTTACTCCCCAGGAGCGCCAAGGTTTTGGGGAACTGCTACA
AGCTGTACCATTGGCTGACAGCTTCCGGCATCTCTACCCCAACACTGCTTACGCTTACACTTTCTGGACT
TACATGATGAATGCCCGCTCTAAGAATGTTGGTTGGCGCCTTGATTACTTTTTGCTTTCCCACTCTCTTT
TACCTGCATTGTGTGACAGCAAGATCCGGTCCAAGGCTCTTGGCAGTGACCACTGTCCCATCACCCTTTA
CCTAGCACTGTGATACCCTCCTGCAGTAGCTTCCTGCCTGGGAGATGGCTCTCTCTGCAGAAGTCTGGTG
TTTTAGCCTTCAGGTGTTTGGTTTTGTATGTGCTCCCTCATTTTAAACATTAAACCAAACTTCTGGTTTC
CTTTAGACAATCCAAGAGAAATAAAAGGCCCTACTTTCAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:5715485 using vector (pYX-Asc) specific primers. Forward Primer - name:RZ. T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZ. T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template usi. T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5715485 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_005116 same experiment
 EMAGE:30944 same embryo
 EMAGE:29482 same embryo
 EMAGE:29485 same embryo
 EMAGE:29577 same embryo
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS