EMAGE mouse gene expression spatial database

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EMAGE:31027

Hoxb13 homeobox B13 ( MGI:107730)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


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View assay images:
Expression pattern clarity:

Expression Pattern Description

Text Annotation:

Structure

Level

Pattern

Notes

spinal cord mantle layer

strong

regional

strong expression: see section 14 15 moderate expression: see section 16

rectum

strong

regional

strong expression: see section 14 15

urethra of male

moderate

regional

moderate expression: see section 14 15

bladder

moderate

regional

moderate expression: see section 14 15 weak expression: see section 16

Annotation Validation:

text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T30131
Entity Detected:	Hoxb13, homeobox B13 ( MGI:107730)
Sequence:	sense strand is shown >T30131 CAACGCTGATGCCAACTGTCAACTATGCCCCCCTGGATCTGCCAGGCTCTGCAGAGCCACCAAAGCAGTG CCACCCTTGTCCTGGGGTGCCTCAGGGGGCATCTCCAGCTCCTGTGCCTTATGGCTACTTTGGAGGCGGG TACTACTCTTGCCGAGTATCCAGGAGCTCCCTGAAACCCTGTGCCCAGACGGCCGCCCTGGCTACCTACC CTTCGGAAACTCCTGCACCTGGGGAGGAGTATCCCAGCCGTCCCACCGAGTTTGCCTTCTATCCGGGCTA CCCGGGACCATACCAGCCTATGGCCAGTTACCTGGATGTGTCTGTGGTGCAGACCCTGGGAGCCCCCGGA GAGCCTCGCCACGATTCTCTGCTTCCCGTGGACAGTTACCAGCCCTGGGCCCTGGCCGGTGGCTGGAACA GCCAGATGTGTTGCCAAGGTGAACAGAACCCACCAGGTCCATTCTGGAAAGCAGCGTTTGCAGAGCCCAG TGTCCAGCACCCTCCTCCCGACGGCTGTGCCTTCCGCCGAGGCCGCAAAAAACGCATTCCCTATAGCAAG GGGCAGTTGCGGGAGTTGGAGCGGGAGTATGCAGCCAACAAGTTTATCACTAAGGACAAGAGGCGCAAGA TCTCGGCAGCCACCAGCCTCTCTGAACGCCAGATTACCATCTGGTTTCAGAACCGCCGGGTCAAGGAGAA GAAGGTTCTTGCCAAGGTCAAGACCAGCACTACCCCGTGAGCACCAGAGGGGATGGGCAGGGGAAGAGGG CTTGTCCTGGAGAACTGGGAGCCTGCCAGGGCCAGGACTGGCAGAGGACTCGGCTGAGGGACCCCAAGAG ATGACACCTTTAGCAGGCTTCTGAGTTCTGGACTGTTCCTCGGGGCTATCCTGCATGT
Notes:	The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from the plasmid IMAGE:4207456), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 18187. Forward Primer - name:018187_F_IRAV28-31_G11_Hoxb13, sequence:CAACGCTGATGCCAACTG; Reverse Primer - name:018187_R_SP6_IRAV28-31_G11_Hoxb13, sequence:CACATGCAGGATAGCCC. The reverse primer contains a 5' extension containing an SP6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using SP6 polymerase.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EurExpress:euxassay_011447 same experiment
	EMAGE:31020 same embryo
	EMAGE:29337 same embryo
	EMAGE:29326 same embryo
	EMAGE:30996 same embryo
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source