EMAGE mouse gene expression spatial database

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EMAGE:31099

Mmp13 ( MGI:1340026)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


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euxassay_009345_11	euxassay_009345_12	euxassay_009345_13	euxassay_009345_14	euxassay_009345_15

euxassay_009345_16	euxassay_009345_17	euxassay_009345_18	euxassay_009345_19	euxassay_009345_20

euxassay_009345_21	euxassay_009345_22	euxassay_009345_23

View assay images:
Expression pattern clarity:

Expression Pattern Description

Text Annotation:

Structure

Level

Pattern

Notes

upper jaw alveolar sulcus

strong

spotted

strong expression: see section 10 11 17 18

mandible

strong

spotted

strong expression: see section 19

lower jaw alveolar sulcus

strong

spotted

strong expression: see section 10 11 16 17 18

Annotation Validation:

text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T36632
Entity Detected:	Mmp13, ( MGI:1340026)
Sequence:	sense strand is shown >T36632 CCAAAACACCAGAGAAGTGTGACCCAGCCCTATCCCTTGATGCCATTACCAGTCTCCGAGGAGAAACTAT GATCTTTAAAGACAGATTCTTCTGGCGCCTGCACCCTCAGCAGGTTGAGGCTGAGCTCTTTTTGACAAAG TCCTTTTGGCCAGAACTTCCCAACCATGTGGATGCTGCATATGAACATCCATCCCGTGACCTTATGTTTA TCTTTAGAGGGAGAAAATTCTGGGCTCTGAATGGTTATGACATTCTGGAAGGTTATCCCAGAAAAATATC TGACCTGGGATTCCCAAAAGAGGTGAAGAGACTGAGCGCTGCGGTTCACTTTGAGAACACGGGGAAGACC CTCTTCTTCTCTGAGAACCACGTGTGGAGTTATGATGATGTTAACCAGACTATGGACAAAGATTATCCCC GCCTCATAGAAGAGGAATTCCCTGGAATTGGCAACAAAGTAGATGCTGTCTATGAGAAAAATGGCTATAT CTACTTTTTCAATGGGCCCATACAGTTTGAATACAGTATCTGGAGTAATCGCATTGTGAGAGTCATGCCA ACAAATTCCATATTGTGGTGTTAAGCATCTTTAAAAGTTGTTATTTATCTCCCAGAGAGTATTTGGAATA CTTTCAGATGTATGGGGTGGGGGTGGGGTGGAGATATCAGGGGAGAGCTTAGTTCTGTGAACGAGCTTCA GTAAGTTATCTTTGAGCATACAGTATCTATATGACTATGCGTGGCTGGAACCACATGGAAGAATTTTAAA GTAATGCAATTGAGAACCCC
Notes:	The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 98134. Forward Primer - name:098134_F_cDNA_Mmp13, sequence:CCAAAACACCAGAGAAGTGTGA; Reverse Primer - name:098134_N_SP6_cDNA_Mmp13, sequence:GGGGTTCTCAATTGCATTAC. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EurExpress:euxassay_009345 same experiment
	EMAGE:31098 same embryo
	EMAGE:32039 same embryo
	EMAGE:30154 same embryo
	EMAGE:29953 same embryo
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source