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EMAGE:31506

Slc12a5 solute carrier family 12, member 5 ( MGI:1862037)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:31506 EMAGE:31506 EMAGE:31506 EMAGE:31506 EMAGE:31506
euxassay_019691_01 euxassay_019691_02 euxassay_019691_03 euxassay_019691_04 euxassay_019691_05
EMAGE:31506 EMAGE:31506 EMAGE:31506 EMAGE:31506 EMAGE:31506
euxassay_019691_06 euxassay_019691_07 euxassay_019691_08 euxassay_019691_09 euxassay_019691_10
EMAGE:31506 EMAGE:31506 EMAGE:31506 EMAGE:31506 EMAGE:31506
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View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Text Annotation:
StructureLevelPatternNotes
hypothalamus mantle layer
moderate moderate
regionalmoderate expression: see section 07 08 09 10 11 12 13 14 15 16 17
medulla oblongata basal plate mantle layer
moderate moderate
regionalmoderate expression: see section 09 10 11 12 13 14 15 16 17 18
cerebral cortex mantle layer
moderate moderate
regionalmoderate expression: see section 09 weak expression: see section 05 06
telencephalon mantle layer
moderate moderate
regionalmoderate expression: see section 01 02 03 04 05 07 08 09 10 11 12 13 15 16 17 18 19 21 22 23 24 weak expression: see section 06 14 20
midbrain mantle layer
moderate moderate
regionalmoderate expression: see section 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20
ventral grey horn
moderate moderate
regionalmoderate expression: see section 11 12 13 14 15 16 17 weak expression: see section 10
diencephalon lateral wall mantle layer
moderate moderate
regionalmoderate expression: see section 07 08 09 10 11 12 13 14 15 16 17 18 19
olfactory cortex mantle layer
moderate moderate
regionalmoderate expression: see section 09 10 11 12 15 16 17 18
rest of cerebellum mantle layer
moderate moderate
regionalmoderate expression: see section 08 17 18 19 weak expression: see section 07 09
medulla oblongata alar plate mantle layer
moderate moderate
regionalmoderate expression: see section 08 09 10 11 12 16 17 18 19
pons mantle layer
moderate moderate
regionalmoderate expression: see section 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20
Annotation Validation: text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T56012
Entity Detected:Slc12a5, solute carrier family 12, member 5 ( MGI:1862037)
Sequence:sense strand is shown

>T56012
GCAGGTCCTTAGCCACTGTCTCTACAGATACCAGGTCCTGGAGTATGGATGGAGTCTTACGGGCCCAGTT
GTTCCTAGCGCTTCTCTGACCTTTTTCTGAGTAGAACTCAAGGCCTTTGGCTTTCCCAAACTCATCCTTG
GCGCTTCCGCTCCACCAGCCCCACCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGGTGCCCTT
AGCCCCTTAGAGAGGCGTTTGGCTGGTTCCCTTGCCCCAGGGCACGTTACTAAGAGGACAGGCACTGCAT
GCTCCTTTAAGCGCCCTCTGGGACTGGGTACAGTGCCTCCAGCCCCAGGGCCCTGGCCTGTGCACCTAGT
TAGACATCATGCTCACTCCAGGGCCAGGACCACTAGCTGACCTCACCACCTCTTTTTCCTTGAGCCCAAG
GCAGAGAGAACTGCAGCTGGTGCCATCAAACGGCTCAGGTGTGGCCAGTGGCAGGGCTGGAGGGCCACTG
CCCTGTTGCTTGGCTCAAGCCCCTCTCAAGGCTTGATGAGGACTGGGCATTCTTCCAGGCAGTAGCCATC
AAGTTGGAAGTGTAGGACCTAGGGCCCACCATCCTTCAAGTCTGCCCTCCCTTGCAGTGGTTTTGCCTTT
TGGGGAAAGAGAGGGGCTGGGTAGCTGGGGAGGAGGCAGCATCGACACCAATTAGGGAACCAAAGTTGCA
TGACCTGGGCCCAGACTCTGGTTGGCAAGAGCAAAGTTTCCGTTGATGAAAACAGCCCACAACAAAACCC
CCAGTTTTCTGTGCTCCATGTGCAATATTTGTTATGAACCTTGTGTCGTTCAAGTCACCTCTATAATCAC
TGTAGCTAGATGTTCCATGTCCATCCAGGTGACTTCTACTCTGAGTGCAATATTTCAGTAGCCTGGTAGT
GAGAAGAGTGTCGCTTCTGTTTCAGCAGACCTATGTGCAGGGCAATGCAATGCAGTCCAAAACCCTT
Notes:The probe template was PCR amplified from E14.5 mouse embryo cDNA using gene specific primers. .
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_019691 same experiment
 EMAGE:10026 same embryo
 EMAGE:10025 same embryo
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS