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EMAGE:32130

Snrpn small nuclear ribonucleoprotein N ( MGI:98347)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:32130 EMAGE:32130 EMAGE:32130 EMAGE:32130 EMAGE:32130
euxassay_003497_01 euxassay_003497_02 euxassay_003497_03 euxassay_003497_04 euxassay_003497_05
EMAGE:32130 EMAGE:32130 EMAGE:32130 EMAGE:32130 EMAGE:32130
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EMAGE:32130 EMAGE:32130 EMAGE:32130 EMAGE:32130 EMAGE:32130
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EMAGE:32130 EMAGE:32130 EMAGE:32130 EMAGE:32130 EMAGE:32130
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euxassay_003497_21 euxassay_003497_22 euxassay_003497_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Text Annotation:
StructureLevelPatternNotes
vestibulocochlear viii ganglion
strong strong
regionalstrong expression: see section 07 08 09 17 18 19
cervico-thoracic ganglion
strong strong
regionalstrong expression: see section 11 12 17
spinal cord
moderate moderate
homogeneousmoderate expression: see section 10 11 12 13 14 15 16 17 18
thoracic ganglion
strong strong
regionalstrong expression: see section 15 16
testis
strong strong
regionalstrong expression: see section 08 09 10 21 22 23 moderate expression: see section 07
telencephalon
moderate moderate
homogeneousmoderate expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23
facial vii ganglion
strong strong
regionalstrong expression: see section 04 05 06 07 08 20 21
not examined not examined
regionalnot examined expression: see section 01 02 03 23
midbrain
moderate moderate
homogeneousmoderate expression: see section 05 06 07 08 09 10 11 12 13 14 15 16 17 18
vagus x ganglion
strong strong
regionalstrong expression: see section 09 17
diencephalon
moderate moderate
homogeneousmoderate expression: see section 07 08 09 10 11 12 13 14 15 16 17
trigeminal v ganglion
strong strong
regionalstrong expression: see section 03 04 05 06 07 08 09 17 18 19 20 21 22
nasal cavity respiratory epithelium
moderate moderate
regionalmoderate expression: see section 13 16
vibrissa
moderate moderate
regionalmoderate expression: see section 06 07 08 09 19 20 21 22 23
nasal cavity olfactory epithelium
moderate moderate
regionalmoderate expression: see section 10 11 12 13 15 16 17 18 19
hindgut
strong strong
regionalstrong expression: see section 13 14 15 16 moderate expression: see section 17 18
cervical ganglion
strong strong
regionalstrong expression: see section 10 17
hindbrain
moderate moderate
homogeneousmoderate expression: see section 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21
neural retina
strong strong
regionalstrong expression: see section 01 02 03 04 23
stomach
strong strong
regionalstrong expression: see section 03 04 05 06 07 08 09 10 11 12
glossopharyngeal ix ganglion
strong strong
regionalstrong expression: see section 07 08 18 19
midgut
strong strong
regionalstrong expression: see section 08 09 10 11 12 13 14 15 16 moderate expression: see section 17 18 19
dorsal root ganglion
strong strong
regionalstrong expression: see section 09 10 11 12 13 14 17 18 19
submandibular gland primordium
strong strong
regionalstrong expression: see section 08 09 18 19 moderate expression: see section 07 10 17 20
lower jaw incisor
moderate moderate
regionalmoderate expression: see section 12 13 14 16 17
upper jaw incisor
moderate moderate
regionalmoderate expression: see section 12 13 14 16
glans of male genital tubercle
strong strong
regionalstrong expression: see section 14 17
Annotation Validation: text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T5963
Entity Detected:Snrpn, small nuclear ribonucleoprotein N ( MGI:98347)
Sequence:sense strand is shown

>T5963
GGAGAGGGAGCCGGAGATGCCAGACGCTTGGTTCTGAGGAGTGATTTGCAACGCAATGGAGCGAGGAAGG
GATCGCTTACACTTGAGAAGAACTACTGAACAGCACGTGCCCGAGGTCGAGGTCCAGGTCAAACGTCGAA
GGACAGCCTCACTGAGCAACCAAGAGTGTCACTTGTACCCACGACGTTCTCAGCAACAGCAAGTTCCTGT
GGTGGATTTCCAGGCAGAACTAAGACAGGCATTCTTAGCTGAGACACCAAGAGGTGGTTAAAGCAGTATT
GCAACTTCAAGGTGGTGGAATTCAAGGAAAACAGGACCCATCCTCTGTCTGTGAAACTTTGGTCAAGCTT
ACATTGTTTGTTAATAGCCTGCATCGAACCTTTATTTATATCCCTTCCCCGAGTATTAAGGATCTTGAAA
TTTTAGTGTTGACAACGGCTATTGTGGAACAGCAATCATGACTGTGGGTAAGAGTAGCAAGATGCTGCAG
CACATTGACTATAGGATGAGATGTATCCTGCAAGATGGGAGAATCTTCATTGGCACCTTCAAGGCTTTTG
ACAAGCATATGAATTTGATCCTCTGTGATTGTGATGAGTTCAGGAAGATCAAGCCAAAGAATGCAAAACA
GCCAGAACGTGAAGAAAAACGGGTTTTGGGTCTGGTCTTGCTACGTGGGGAGAACTTGGTTTCAATGACT
GTGGAGGGCCCACCTCCTAAAGATACTGGCATTGCTCGTGTGCCTCTTGCTGGCGCTGCAGGTGGCCCTG
GGGTTGGAAGAGCAGCTGGCAGAGGAGTGCCAGCAGGTGTACCTATTCCCCAGGCTCCTGCTGGATTAGC
AGGCCCTGTCAGAGGAGTTGGAGGCCCATCCCAGCAGGTCATGACCCCACAGGGAAGAGGCACTGTTGCA
GCTGCTGCTGTTGCTGCTACTGCTAGCATTGCAGGAGCCCCAACCCAGTACCCGCCAGGACGGGGAACTC
CACCTCCACCTGTAGGCAGAGCAACCCCACCTCCAGGCATTATGGCTCCTCCACCTGGTATGAGACCACC
CATGGGCCCACCCATTGGGCTTCCCCCTGCTCGTGGGACACCTATAGGCATGCCTCCTCCAGGAATGAGA
CCCCCTCCACCAGGAATTAGAGGCCCACCTCCCCCAGGAATGCGCCCACCAAGACCCTAAGATACAGTTG
ATAAATCTCAGCCCTTCTCTTCCCCTACAATGCTTCTTGTGAAATTGTGTACCTGCAAGCTTTTTGACCC
CTCTTACTGCATTAACTATAGATAATAAATACATAGAGCAATTCAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3484323 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZ. T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3484323 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_003497 same experiment
 EMAGE:32129 same assay
 EMAGE:32177 same embryo
 EMAGE:32129 same embryo
 EMAGE:31331 same embryo
 EMAGE:31931 same embryo
 EMAGE:29768 same embryo
 EMAGE:32136 same embryo
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS