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EMAGE:32177

Fkbp1a ( MGI:95541)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:32177 EMAGE:32177 EMAGE:32177 EMAGE:32177 EMAGE:32177
euxassay_003477_01 euxassay_003477_02 euxassay_003477_03 euxassay_003477_04 euxassay_003477_05
EMAGE:32177 EMAGE:32177 EMAGE:32177 EMAGE:32177 EMAGE:32177
euxassay_003477_06 euxassay_003477_07 euxassay_003477_08 euxassay_003477_09 euxassay_003477_10
EMAGE:32177 EMAGE:32177 EMAGE:32177 EMAGE:32177 EMAGE:32177
euxassay_003477_11 euxassay_003477_12 euxassay_003477_13 euxassay_003477_14 euxassay_003477_15
EMAGE:32177 EMAGE:32177 EMAGE:32177 EMAGE:32177 EMAGE:32177
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euxassay_003477_21 euxassay_003477_22 euxassay_003477_23 euxassay_003477_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: one star
Expression Pattern Description
Text Annotation:
StructureLevelPatternNotes
ventral grey horn
moderate moderate
regionalmoderate expression: see section 14 15 16 17 weak expression: see section 13
medulla oblongata basal plate ventricular layer
moderate moderate
regionalmoderate expression: see section 12 13 14 weak expression: see section 15
pons ventricular layer
moderate moderate
regionalmoderate expression: see section 11 12 13 14 17 18 weak expression: see section 15 16
thalamus ventricular layer
moderate moderate
regionalmoderate expression: see section 14
rest of cerebellum ventricular layer
moderate moderate
regionalmoderate expression: see section 08 09 11 12 13 18 19 20 21 22 23
thalamus mantle layer
moderate moderate
regionalmoderate expression: see section 07 08 09 10 11 12 13 15 16 17 18 19
meckel's cartilage
moderate moderate
regionalmoderate expression: see section 06 07 08 09 10 19 20 21 22 23 24 weak expression: see section 11 12
lower jaw molar
moderate moderate
regionalmoderate expression: see section 07 08 09 10 20 21 22 23
upper jaw molar
moderate moderate
regionalmoderate expression: see section 07 08 09 10 19 20 21 22 23
telencephalon ventricular layer
moderate moderate
regionalmoderate expression: see section 04 05 06 20 21 22 weak expression: see section 03 23
midbrain ventricular layer
moderate moderate
regionalmoderate expression: see section 09 10 11 12 13 14 15
upper lip
moderate moderate
regionalmoderate expression: see section 06 07 08 09 10 22 23 24
hypothalamus ventricular layer
moderate moderate
regionalmoderate expression: see section 11 12 13 14 15 16 17
lower jaw incisor
moderate moderate
regionalmoderate expression: see section 19
orbito-sphenoid
moderate moderate
regionalmoderate expression: see section 01 02 03 04 05 06 23 24
diencephalon lateral wall ventricular layer
moderate moderate
regionalmoderate expression: see section 12 13 14 15
lower lip
moderate moderate
regionalmoderate expression: see section 07 08 09 10 22 23
Annotation Validation: text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6213
Entity Detected:Fkbp1a, ( MGI:95541)
Sequence:sense strand is shown

>T6213
CTCCGGCTCCACGCCGCCCGTCGCGCCGCCACCCGCGTCCTTTTCCTCCTCCTCCGCCAACGCCGCCGCC
GCCGCCGCCGCCATGGGAGTGCAGGTGGAGACCATCTCTCCTGGAGACGGGCGCACCTTCCCAAAGCGCG
GCCAGACCTGCGTGGTGCACTACACGGGGATGCTTGAAGATGGAAAGAAATTTGATTCCTCTCGGGACAG
AAACAAGCCTTTTAAGTTTACACTAGGCAAGCAGGAGGTGATCCGAGGCTGGGAGGAAGGGGTAGCCCAG
ATGAGTGTGGGTCAGAGAGCCAAACTGATAATCTCCTCAGACTATGCCTATGGAGCCACCGGGCACCCAG
GCATCATCCCACCACATGCCACTCTTGTTTTTGATGTGGAGCTTCTAAAACTGGAATGACAGAAGTGGCC
TCCTCCCTTAGCTCTGCACGTGGATCTGCCATGGAGGAATCTGGTACCTCCAGATGGGTGCACATGAATC
CATGGGGAGCTCTTCCTGACGTCCCACCACCCTTTGTATAGACACCTACCCGACTGAATGTGTTCCGTCA
CTCAGCTTTGCTTCGGACACCTCCATGTCCTCTTCCCCCCTCTGTATGTGTGTTGACCTAAACTATATGC
CATAAACCTCAAGTTACTTTATTTTGGGGTGAAGACTCAGTTTCTGTTTCAGATCTAAGTTTCCAATGAA
GTATATTGTCAAGTGTTAACAGCACAAGCGATGGGTTAACTTAGAATAGAAATTGGTGTTGGGGGGGGAT
TTGCAAGAATTTTTATTTTATTTTATTTTAATTTTTTGGATGAAAATTTTATCTATTATATATTAAGACA
TTCTGCTGCTGTGCTGCAAAGCCATAGCAGATTCGAGATGCTGTTGAGGGCTGGATTTTTCTCTAGTGAG
GGAGGTCCTGTTAAACTGAAAGCCCTACCCAAACTGAGGTGGGAAGGAAGCGGGGGAGAGAGCCTTGGCT
TCTGACAGTCCTTCCACCTTCTGAAACTAGCTGCCTTTTAAAGCAGATCCCTTCACTGCTATGTTGGACA
CTACAGTATCTGTCCCTGGGTTGGCAGAGACTTGAAAGCCTTTGTGACCTGGCTTAATTTGTTTTTCATC
CTATGGTTTTTCTAATGGATTTTCTGGACTTTTGTAATCTTGTAACTATTCAAGCTCCACTTTCTAAATT
TTAAGAACTTCAGTGGAAAGTTTAAATTGAAGGTGCTGTTTGTAGACTCACCACCCAACGGACGCCCAGC
CACCACGGCAAATCCTTGAGTGTTCTCTAAGAATACGATGCTGGTCATCACAGCTTCAGCATCTCCTGGG
TTTTGATGCTTGGCTCTTTGCTGATCTTGGCTTCCTGGCTTTTCCTCCTTCAGTTCCTTCTCACCCTCTG
CTGTCCTTGTGTAGTGATTTGGTGAGAGAAAGCTTTTGTCCCCTGCCCTCTGCACTACATATGCGGTTCA
AGTTTTATTATTGCAATAAAAGTGCTTTATGCTGGCTTTTCTCAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3498682 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZ. T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3498682 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_003477 same experiment
 EMAGE:32130 same embryo
 EMAGE:32129 same embryo
 EMAGE:31331 same embryo
 EMAGE:31931 same embryo
 EMAGE:29768 same embryo
 EMAGE:32136 same embryo
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS