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EMAGE:6842

Tnfsf13 tumor necrosis factor (ligand) superfamily, member 13 ( MGI:1916833)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:6842 EMAGE:6842 EMAGE:6842 EMAGE:6842 EMAGE:6842
"Pseudo-wholemount" of euxassay_002671. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_002671_01 euxassay_002671_02 euxassay_002671_03 euxassay_002671_04
EMAGE:6842 EMAGE:6842 EMAGE:6842 EMAGE:6842 EMAGE:6842
euxassay_002671_05 euxassay_002671_06 euxassay_002671_07 euxassay_002671_08 euxassay_002671_09
EMAGE:6842 EMAGE:6842 EMAGE:6842 EMAGE:6842 EMAGE:6842
euxassay_002671_10 euxassay_002671_11 euxassay_002671_12 euxassay_002671_13 euxassay_002671_14
EMAGE:6842 EMAGE:6842 EMAGE:6842 EMAGE:6842 EMAGE:6842
euxassay_002671_15 euxassay_002671_16 euxassay_002671_17 euxassay_002671_18 euxassay_002671_19
EMAGE:6842 EMAGE:6842 EMAGE:6842
euxassay_002671_20 euxassay_002671_21 euxassay_002671_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:6842Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
6842_wholemount_strong.wlz
6842_wholemount_moderate.wlz
6842_wholemount_weak.wlz
6842_wholemount_possible.wlz
6842_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:6842_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T5039
Entity Detected:Tnfsf13, tumor necrosis factor (ligand) superfamily, member 13 ( MGI:1916833)
Sequence:sense strand is shown

>T5039
CTTCCTAGATAATGGCACCAAATTCTCCTGAGGCTAGGGGGGAAGGAGTGTCAGAGTGTCACTAGCTCGA
CCCTGGGGACAAGGGGGACTAATAGTACCCTAGCTTGATTTCTTCCTATTCTCAAGTTCCTTTTTATTTC
TCCCTTGCGTAACCCGCTCTTCCCTTCTGTGCCTTTGCCTGTATTCCCACCCTCCCTGCTACCTCTTGGC
CACCTCACTTCTGAGACCACAGCTGTTGGCAGGGTCCCTAGCTCATGCCAGCCTCATCTCCAGGCCACAT
GGGGGGCTCAGTCAGAGAGCCAGCCCTTTCGGTTGCTCTTTGGTTGAGTTGGGGGGCAGTTCTGGGGGCT
GTGACTTGTGCTGTCGCACTACTGATCCAACAGACAGAGCTGCAAAGCCTAAGGCGGGAGGTGAGCCGGC
TGCAGCGGAGTGGAGGGCCTTCCCAGAAGCAGGGAGAGCGCCCATGGCAGAGCCTCTGGGAGCAGAGTCC
TGATGTCCTGGAAGCCTGGAAGGATGGGGCGAAATCTCGGAGAAGGAGAGCAGTACTCACCCAGAAGCAC
AAGAAGAAGCACTCAGTCCTGCATCTTGTTCCAGTTAACATTACCTCCAAGGCAGACTCTGACGTGACAG
AGGTGATGTGGCAACCAGTACTTAGGCGTGGGAGAGGCCTGGAGGCCCAGGGAGACATTGTACGAGTCTG
GGACACTGGAATTTATCTGCTCTATAGTCAGGTCCTGTTTCATGATGTGACTTTCACAATGGGTCAGGTG
GTATCTCGGGAAGGACAAGGGAGAAGAGAAACTCTATTCCGATGTATCAGAAGTATGCCTTCTGATCCTG
ACCGTGCCTACAATAGCTGCTACAGTGCAGGTGTCTTTCATTTACATCAAGGGGATATTATCACTGTCAA
AATTCCACGGGCAAACGCAAAACTTAGCCTTTCTCCGCATGGAACATTCCTGGGGTTTGTGAAACTATGA
TTGTTATAAAGGGGGTGGGGATTTCCCATTCCAAAAACTGGCTAGACAAAGGACAAGGAACGGTCAAGAA
CAGCTCTCCATGGCTTTGCCTTGACTGTTGTTCCTCCCTTTGCCTTTCCCGCTCCCACTATCTGGGCTTT
GACTCCATGGATATTAAAAAAGTAGAATATTTTGTGTTTATCTCCCAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:5290965 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5290965 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:6845 same embryo
 EMAGE:6846 same embryo
 EMAGE:6848 same embryo
 EMAGE:6843 same embryo
 EMAGE:6844 same embryo
 EMAGE:6847 same embryo
 EurExpress:euxassay_002671 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS