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EMAGE:6846

Rhox4a reproductive homeobox 4A ( MGI:3580240)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:6846 EMAGE:6846 EMAGE:6846 EMAGE:6846 EMAGE:6846
"Pseudo-wholemount" of euxassay_002412. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_002412_01 euxassay_002412_02 euxassay_002412_03 euxassay_002412_04
EMAGE:6846 EMAGE:6846 EMAGE:6846 EMAGE:6846 EMAGE:6846
euxassay_002412_05 euxassay_002412_06 euxassay_002412_07 euxassay_002412_08 euxassay_002412_09
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euxassay_002412_10 euxassay_002412_11 euxassay_002412_12 euxassay_002412_13 euxassay_002412_14
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euxassay_002412_15 euxassay_002412_16 euxassay_002412_17 euxassay_002412_18 euxassay_002412_19
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euxassay_002412_20 euxassay_002412_21 euxassay_002412_22 euxassay_002412_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:6846Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
6846_wholemount_strong.wlz
6846_wholemount_moderate.wlz
6846_wholemount_weak.wlz
6846_wholemount_possible.wlz
6846_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:6846_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T5041
Entity Detected:Rhox4a, reproductive homeobox 4A ( MGI:3580240)
Sequence:sense strand is shown

>T5041
GAACTCCGACTCAGAATCTGCTGGGGAAAGCTGCAGGGAAGCACTCAGGACATGGAGCATCAAAACACCA
ACTACCTACTTCATGAGGGACTTGGCAAGGACAAGGAAAATTTGAATGGTGGGAAGACACAGGCAGTCTT
ACCACTGGATGGAGAGGGAAGAAATGAGGGAGAGAGTGTACTGGGCCAGTCCGGAGCCGCAGCAGTGGAA
GGGGACAAAGCAGAAGAATTAAGTGGAGAAGGTGGGCCTGCTGCTGGTGATGCAGACCTCATGGATAACA
GCAACCAAGAGGACCAGGACACCAGTGGCAGTGCCCAGGAGGAGGAGAAGCTGCCAGAGGAGCCAGTTCT
CAAGGATGCTGTGGTCATAGACAAAGTGCAGCCTATTCCAGTGCTGGTATCTGGTGTGCGGCCTAAGTCA
GTGTGGGTACAGCAGCGTAGCTTACACTACAATTTCCAATGGTGGCAGCTGCAGGAGCTGGAGCGCATTT
TCCAGCAGAATCACTTCATCCGTGCAGAGGAAAGAAGACATCTGGCAAGATGGATAGGTGTGAGTGAAGC
CAGAGTTAAGAGATGGTTTAAGAAGAGGAGAGAGCACTTCAGAAGAGGACAAAGTCAGTTAGGAATGAAT
GATGACGCCTCTGTGGGGTCCCACTCTACCTTTCTCTGAAGATGGCACAGGAGGCCTGGTGTACCACCCT
TGACCAGGAGCCACGTGCAGACCCCTGCTGCCTTCCACCAGCATGTTATTGCATCTCTATTCCCTAAGCA
TTTGTATGTGAAATAAATAGATTCTCAGTTTCTTTGAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:5292192 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5292192 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:6845 same assay
 EMAGE:6848 same embryo
 EMAGE:6843 same embryo
 EMAGE:6844 same embryo
 EMAGE:6842 same embryo
 EurExpress:euxassay_002412 same experiment
 EMAGE:6847 same embryo
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS