Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:6869

Htra2 HtrA serine peptidase 2 ( MGI:1928676)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:6869 EMAGE:6869 EMAGE:6869 EMAGE:6869 EMAGE:6869
"Pseudo-wholemount" of euxassay_002414. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_002414_01 euxassay_002414_02 euxassay_002414_03 euxassay_002414_04
EMAGE:6869 EMAGE:6869 EMAGE:6869 EMAGE:6869 EMAGE:6869
euxassay_002414_05 euxassay_002414_06 euxassay_002414_07 euxassay_002414_08 euxassay_002414_09
EMAGE:6869 EMAGE:6869 EMAGE:6869 EMAGE:6869 EMAGE:6869
euxassay_002414_10 euxassay_002414_11 euxassay_002414_12 euxassay_002414_13 euxassay_002414_14
EMAGE:6869 EMAGE:6869 EMAGE:6869 EMAGE:6869 EMAGE:6869
euxassay_002414_15 euxassay_002414_16 euxassay_002414_17 euxassay_002414_18 euxassay_002414_19
EMAGE:6869 EMAGE:6869 EMAGE:6869 EMAGE:6869 EMAGE:6869
euxassay_002414_20 euxassay_002414_21 euxassay_002414_22 euxassay_002414_23 euxassay_002414_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:6869Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
6869_wholemount_strong.wlz
6869_wholemount_moderate.wlz
6869_wholemount_weak.wlz
6869_wholemount_possible.wlz
6869_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:6869_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T5078
Entity Detected:Htra2, HtrA serine peptidase 2 ( MGI:1928676)
Sequence:sense strand is shown

>T5078
CTGGAGAGGAGCGCGTCCTGACGGGACTACGTTTCCCGGCATGCGCTGAACAGCTACCGTCGTGCCCTGC
TTCTCCTAGACCGCTTGCCGGGTTCTAGAGGACCGCCTCTGAGTAGGGCGGGCGAGGAGAGTCGAGGCGG
AGCTGATGGCTGCGCTGAAAGCGGGGCGGGGTGCAAACTGGAGCCTTCGGGCATGGCGGGCTTTGGGGGG
CATCTTCTGGAGGAAGCCTCCCCTGTTAGCTCCTGACCTCCGGGCTCTGCTGACGTCAGGAACTCCTGAC
TCTCAGATCTGGATGACTTATGGGACCCCCAGTCTCCCGGCCCAGGTGCCTGAGGGGTTCCTTGCATCAC
GGGCAGATCTGACGTCTAGGACCCCGGATCTCTGGGCACGATTGAATGTGGGGACTTCAGGCTCCAGTGA
CCAGGAGGCCCGCAGGAGCCCTGGAAGCCGTCGGCGCGAATGGCTGGCGGTGGCGGTGGGCGCAGGAGGT
GCAGTGGTGCTGCTGTTGTGGGGTTGGGGTCGGGGTCTTTCCACGGTGCTGGCTGCTGTTCCTGCTCCGC
CACCCACTTCTCCCCGGAGCCAGTACAATTTCATCGCAGATGTGGTGGAGAAGACAGCCCCTGCTGTGGT
CTATATCGAGATCCTAGACCGGCACCCTTTCTCCGGCCGTGAAGTCCCCATCTCAAACGGATCAGGATTC
GTAGTGGCTTCAGATGGGCTCATCGTTACCAACGCCCACGTGGTGGCTGATCGGCGCCGAGTACGAGTGA
GGCTGCCTAGCGGGGATACTTATGAGGCCATGGTCACAGCTGTGGATCCCGTAGCAGACATTGCCACACT
GAGGATTCAAACCAAGGAGCCTCCTCCCACACTGCCCCTCGGCCGCTCTGCTGATGTCCGGCAAGGGGAG
TTTGTTGTTGCCATGGGAAGCCCCTTTGCACTGCAGAACACGATCACATCTGGTATTGTCAGCTCTGCTC
AGCGCCCAGCCAGGGACCTGGGACTCCCTCAAAACAACGTGGAATACATTCAGACCGATGCAGCTATTGA
TTTTGGAAATTCTGGTGGTCCCCTGGTTAACCTGGATGGGGAGGTGATTGGAGTGAACACCATGAAGGTG
ACAGCTGGAATCTCCTTTGCCATCCCTTCTGATCGCCTTAGGGAGTTTCTGCATCGCGGGGAAAAGAAAA
ATTCCTGGTTTGGAACCAGTGGGTCCCAGCGCCGCTACATTGGAGTGATGATGCTGACCCTGACTCCCAG
CATCCTTATTGAACTACAGCTCCGTGAGCCAAGCTTCCCTGATGTTCAGCATGGTGTCCTCATTCATAAA
GTTATCCTGGGCTCCCCCGCACACAGGGCTGGTCTGCGGCCTGGTGATGTGATCTTGGCCATTGGGGAGA
AATTGGCACAAAATGCTGAAGATGTTTATGAAGCTGTTCGAACCCAATCACAGCTGGCAGTGCGGATCCG
GCGCGGATCAGAGACACTGATCTTATATGTGACCCCCGAGGTCACAGAATGAATGACTGGACCGGCAAGA
GTGTGAAGCTCTTGCCCTGATCTCCTCCTTGCTTTCCTAGCCTAGGTTCTGAGTGCATGTGGGTAGAGGA
GGAGTCAGTGAACCTGCGGAGGGCAAGTCCCTCTAACCGCTGCATCAGTCCTGGGCTCCGAAGAACACAT
TTTATATAAAATAAAATTATACCTAGCAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:5321861 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5321861 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:6867 same embryo
 EMAGE:6868 same embryo
 EMAGE:6871 same embryo
 EMAGE:6870 same embryo
 EMAGE:6866 same embryo
 EurExpress:euxassay_002414 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS