Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:6870

Hnrnpa3 heterogeneous nuclear ribonucleoprotein A3 ( MGI:1917171)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:6870 EMAGE:6870 EMAGE:6870 EMAGE:6870 EMAGE:6870
euxassay_002540_01 euxassay_002540_02 euxassay_002540_03 euxassay_002540_04 euxassay_002540_05
EMAGE:6870 EMAGE:6870 EMAGE:6870 EMAGE:6870 EMAGE:6870
euxassay_002540_06 euxassay_002540_07 euxassay_002540_08 euxassay_002540_09 euxassay_002540_10
EMAGE:6870 EMAGE:6870 EMAGE:6870 EMAGE:6870 EMAGE:6870
euxassay_002540_11 euxassay_002540_12 euxassay_002540_13 euxassay_002540_14 euxassay_002540_15
EMAGE:6870 EMAGE:6870 EMAGE:6870 EMAGE:6870 EMAGE:6870
euxassay_002540_16 euxassay_002540_17 euxassay_002540_18 euxassay_002540_19 euxassay_002540_20
EMAGE:6870 EMAGE:6870 EMAGE:6870 EMAGE:6870
euxassay_002540_21 euxassay_002540_22 euxassay_002540_23 euxassay_002540_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:6870Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
6870_wholemount_strong.wlz
6870_wholemount_moderate.wlz
6870_wholemount_weak.wlz
6870_wholemount_possible.wlz
6870_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:6870_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T5077
Entity Detected:Hnrnpa3, heterogeneous nuclear ribonucleoprotein A3 ( MGI:1917171)
Sequence:sense strand is shown

>T5077
CCACGCGTCCGGCGAGTCCGGTCTCAAAATGGAGGTAAAACCGCCGCCCGGTCGCCCCCAGCCTGACTCC
GGCCGTCGCCGCCGCCGCCGGGGGGAGGAGGGCCATGATCCAAAGGAACCAGAGCAGCTGAGGAAGCTAT
TTATTGGTGGTCTGAGCTTTGAAACCACAGATGATAGCTTAAGAGAACATTTTGAGAAATGGGGCACACT
TACAGACTGTGTGGTAATGAGAGATCCCCAAACAAAACGTTCCAGAGGCTTTGGTTTTGTGACCTACTCT
TGTGTTGAAGAGGTGGATGCTGCAATGTGTGCTCGGCCACACAAGGTTGATGGGCGTGTGGTGGAACCGA
AGAGAGCTGTTTCTAGAGAGGATTCTGTAAAGCCTGGTGCCCATTTAACGGTGAAGAAAATTTTTGTTGG
TGGTATTAAAGAGGATACGGAAGAATATAACCTGAGAGACTACTTTGAAAAGTATGGCAAGATTGAAACC
ATAGAGGTTATGGAAGACAGGCAGAGTGGGAAAAAGAGAGGATTTGCTTTTGTAACTTTTGATGATCATG
ACACAGTTGATAAAATTGTTGTTCAGAAATACCACACTATTAATGGGCATAATTGTGAAGTGAAAAAGGC
CCTTTCTAAACAAGAGATGCAGTCTGCTGGATCACAGAGAGGTCGTGGAGGTGGATCTGGCAACTTTATG
GGTCGTGGAGGAAACTTTGGAGGTGGTGGAGGAAACTTTGGTCGTGGAGGAAACTTTGGTGGAAGAGGTG
GCTATGGTGGTGGAGGTGGTGGCAGCAGAGGTAGTTATGGAGGTGGTGATGGTGGATATAATGGATTTGG
AGGTGATGGTGGCAACTATGGTGGTGGTCCTGGTTACAGCAGTAGAGGAGGTTATGGAGGTGGTGGACCA
GGATATGGAAACCAGGGTGGTGGATATGGTGGTGGAGGAGGAGGCTATGATGGTTACAATGAAGGAGGAA
ATTTTGGTGGAGGTAACTATGGTGGTGGTGGAAACTATAATGACTTTGGAAATTATAGTGGACAGCAACA
ATCAAATTATGGACCCATGAAGGGGGGCAGTTTTGGTGGAAGAAGCTCAGGCAGTCCCTATGGTGGTGGC
TATGGATCTGGAGGTGGAAGTGGTGGATATGGTAGCAGAAGGTTTTAAAATAAAACAGAAACGGCTACAG
TTCTTAGCAGGAGAGAGAGCGAGGAGTTGTCAGGAAAGCTGCAGGTTACTTTGAGACAGTCGTCCCAAAT
GCATTAGAGGAACTGTAAAAATCTGCCACAGAAGGAACGATGATCCATAGTCAGAAAAGTTACTGCAGCT
TAAACAGGAAACCCTTCTTGTTCAGGACTGTCATAGCCACAGTTTGCAAAAAGTGCAGCTATTGATTAAT
GCAATGTAGTGTCAATTAGATGTACATTCCTGAGGTCTTTTATCTGTTGTAGCTTTGTCTTTTTCTTTTT
CTTTTCATTACATCAGGTATATTGCCCTGTAAATTGTGGTAGTGGTACCAGGAATAAAAAATTAAGGAAT
TTTTAACTTTTCAATATTTGTGTAGTTCAGTTTTTCTACATTTTAGTACAGAAACTTTAACAAAATGCAG
TTTCGAAGGTGTTTCCTTGTGAGTTAACACGTGAAGAAGATCATTGTTAATTACTATTTTGTATGAATTT
TGCTAAAGTTAACTGTAAAGAAACACCTACTGACTTGCAATTTAAGGGGAATCTATTCTCCCCATTTCCA
AAACAATGATGAATGGGCGCTGACATGTGGAGAGAATAGATATTTGTATGTTTGCAATGTGTGTTTTAGA
TAATTAGAATTGGGAAATAAAAAAATAGCATATTTGTGAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:5322033 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5322033 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:6869 same embryo
 EMAGE:6867 same embryo
 EMAGE:6868 same embryo
 EMAGE:6871 same embryo
 EMAGE:6866 same embryo
 EurExpress:euxassay_002540 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS