Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:7191

a nonagouti ( MGI:87853)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:7191 EMAGE:7191 EMAGE:7191 EMAGE:7191 EMAGE:7191
"Pseudo-wholemount" of euxassay_002701. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_002701_01 euxassay_002701_02 euxassay_002701_03 euxassay_002701_04
EMAGE:7191 EMAGE:7191 EMAGE:7191 EMAGE:7191 EMAGE:7191
euxassay_002701_05 euxassay_002701_06 euxassay_002701_07 euxassay_002701_08 euxassay_002701_09
EMAGE:7191 EMAGE:7191 EMAGE:7191 EMAGE:7191 EMAGE:7191
euxassay_002701_10 euxassay_002701_11 euxassay_002701_12 euxassay_002701_13 euxassay_002701_14
EMAGE:7191 EMAGE:7191 EMAGE:7191 EMAGE:7191 EMAGE:7191
euxassay_002701_15 euxassay_002701_16 euxassay_002701_17 euxassay_002701_18 euxassay_002701_19
EMAGE:7191 EMAGE:7191 EMAGE:7191 EMAGE:7191
euxassay_002701_20 euxassay_002701_21 euxassay_002701_22 euxassay_002701_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:7191Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
7191_wholemount_strong.wlz
7191_wholemount_moderate.wlz
7191_wholemount_weak.wlz
7191_wholemount_possible.wlz
7191_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:7191_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T5855
Entity Detected:a, nonagouti ( MGI:87853)
Sequence:sense strand is shown

>T5855
CTCAGCCAACTGCTCGCTCGCTCACCTCCCTCCTCTAGCTAGAACTAGTGGATCGCTTTAAATTTGCCTA
GAATTCGCTGTCTGCGAGGGCCAGCTGTTGGGGTGTCCACTCCCAGGTCCAACTGCAGCCCAAGCTCTAG
CTATAGTTCTAGAATTCGGCTTACAGGAAAGACATTCTGGCCTGGCTTCCCTTAGGGGAGCTGATGCGGA
ATAGAGTCACTTGTGCTGCTTCTCAGGATGGATGTCACCCGCCTACTCCTGGCCACCCTAGTGAGCTTCC
TGTGCTTCTTCACCGTCCACAGCCACCTGGCACTCGAGGAGACGCTTGGAGATGACAGGAGTCTGCGGAG
TAACTCCTCCATGAACTCGCTGGATTTCTCCTCTGTTTCTATCGTGGCACTGAACAAGAAATCCAAGAAG
ATCAGCAGAAAAGAAGCCGAGAAGCGGAAGAGGTCTTCCAAGAAAAAGGCTTCGATGAAGAAGGTGGCAA
GGCCCCCGCCACCTTCGCCCTGCGTGGCCACCCGCGACAGCTGCAAGCCACCCGCACCCGCCTGCTGCGA
CCCGTGCGCCTCCTGCCAGTGCCGTTTCTTCGGCAGCGCCTGCACCTGTCGAGTACTCAACCCCAACTGC
TGACGCAGCTTCTTCGCTGCGCGCGCAGCTTCGGGAACGGGTGATTGGGCGGGGCTTCAGGGTCCCGCGC
TTCTAGGCTGAGGGGCGGGTCTCTGTGGGTGGGGCTTGTGGGTGGGCGTGGTCAGTGGTTGTGACTTGTG
GGCGCTTTCAAAAAACCGGTTTTCTAGGAAACCTAGTGGAAGCTAAAAAGCCGAATTCTAGAGGTACCGG
TTGTTGATCCCCCGGGCTGCAGCCCGGGGGATCTGGGGTGGCATCCCTGTGACCCCTCCCCAGTGCCTCT
CCTGGCCCTGGAAGTTGCCACTCCAGTGCCCACCAGCCTTGTCCTAATAAAATTAAGTTGCATCAAAAAA
AAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3154863 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3154863 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:7193 same embryo
 EMAGE:7189 same embryo
 EMAGE:7192 same embryo
 EMAGE:7190 same embryo
 EMAGE:7188 same embryo
 EurExpress:euxassay_002701 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS