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EMAGE:7237

Ptpn1 protein tyrosine phosphatase, non-receptor type 1 ( MGI:97805)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:7237 EMAGE:7237 EMAGE:7237 EMAGE:7237 EMAGE:7237
"Pseudo-wholemount" of euxassay_004342. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_004342_01 euxassay_004342_02 euxassay_004342_03 euxassay_004342_04
EMAGE:7237 EMAGE:7237 EMAGE:7237 EMAGE:7237 EMAGE:7237
euxassay_004342_05 euxassay_004342_06 euxassay_004342_07 euxassay_004342_08 euxassay_004342_09
EMAGE:7237 EMAGE:7237 EMAGE:7237 EMAGE:7237 EMAGE:7237
euxassay_004342_10 euxassay_004342_11 euxassay_004342_12 euxassay_004342_13 euxassay_004342_14
EMAGE:7237 EMAGE:7237 EMAGE:7237 EMAGE:7237 EMAGE:7237
euxassay_004342_15 euxassay_004342_16 euxassay_004342_17 euxassay_004342_18 euxassay_004342_19
EMAGE:7237 EMAGE:7237 EMAGE:7237 EMAGE:7237
euxassay_004342_20 euxassay_004342_21 euxassay_004342_22 euxassay_004342_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:7237Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
7237_wholemount_strong.wlz
7237_wholemount_moderate.wlz
7237_wholemount_weak.wlz
7237_wholemount_possible.wlz
7237_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:7237_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T5889
Entity Detected:Ptpn1, protein tyrosine phosphatase, non-receptor type 1 ( MGI:97805)
Sequence:sense strand is shown

>T5889
GCGGGTGACGGGCTTCGGGACGCGGAGCGACGCGGCCTAGCGCGGCGGACGGCCGTGGGAACTCGGGCAG
CCGACCCGTCCCGCCATGGAGATGGAGAAGGAGTTCGAGGAGATCGACAAGGCTGGGAACTGGGCGGCTA
TTTACCAGGACATTCGACATGAAGCCAGCGACTTCCCATGCAAAGTCGCGAAGCTTCCTAAGAACAAAAA
CCGGAACAGGTACCGAGATGTCAGCCCTTTTGACCACAGTCGGATTAAATTGCACCAGGAAGATAATGAC
TATATCAATGCCAGCTTGATAAAAATGGAAGAAGCCCAGAGGAGCTATATTCTCACCCAGGGCCCTTTAC
CAAACACATGTGGGCACTTCTGGGAGATGGTGTGGGAGCAGAAGAGCAGGGGCGTGGTCATGCTCAACCG
CATCATGGAGAAAGGCTCGTTAAAATGTGCCCAGTATTGGCCACAGCAAGAAGAAAAGGAGATGGTCTTT
GATGACACAGGTTTGAAGTTGACACTAATCTCTGAAGATGTCAAGTCATATTACACAGTACGACAGTTGG
AGTTGGAAAACCTGACTACCAAGGAGACTCGAGAGATCCTGCATTTCCACTACACCACATGGCCTGACTT
TGGAGTCCCCGAGTCACCGGCTTCTTTCCTCAATTTCCTTTTCAAAGTCCGAGAGTCAGGCTCACTCAGC
CTGGAGCATGGCCCCATTGTGGTCCACTGCAGCGCCGGCATCGGGAGGTCAGGGACCTTCTGTCTGGCTG
ACACCTGCCTCTTACTGATGGACAAGAGGAAAGACCCATCTTCCGTGGACATCAAGAAAGTACTGCTGGA
GATGCGCAGGTTCCGCATGGGGCTCATCCAGACTGCCGACCAGCTGCGCTTCTCCTACCTGGCTGTCATC
GAGGGCGCCAAGTTCATCATGGGCGACTCGTCAGTGCAGGATCAGTGGAAGGAGCTCTCCCGGGAGGATC
TAGACCTTCCACCCGAGCACGTGCCCCCACCTCCCCGGCCACCCAAACGCACACTGGAGCCTCACAACGG
GAAGTGCAAGGAGCTCTTCTCCAGCCACCAGTGGGTGAGCGAGGAGACCTGTGGGGATGAAGACAGCCTG
GCCAGAGAGGAAGGCAGAGCCCAGTCAAGTGCCATGCACAGCGTGAGCAGCATGAGTCCAGACACTGAAG
TTAGGAGACGGATGGTGGGTGGAGGTCTTCAAAGTGCTCAGGCGTCTGTCCCCACCGAGGAAGAGCTGTC
CTCCACTGAGGAGGAACACAAGGCACATTGGCCAAGTCACTGGAAGCCCTTCCTGGTCAATGTGTGCATG
GCCACGCTCCTGGCCACCGGCGCGTACTTGTGCTACCGGGTGTGTTTTCACTGACAGACTGGGAGGCACT
GCCACTGCCCAGCTTAGGATGCGGTCTGCGGCGTCTGACCTGGTGTAGAGGGAACAACAACTCGCAAGCC
TGCTCTGGAACTGGAAGGGCCAGCCCCAGGAGGGTATTAGTGCACTGGGCTTTGAAGGAGCCCCTGGTCC
CACGAACAGAGTCTAATCTCAGGGCCTTAACCTGTTCAGGAGAAGTAGAGGAAATGCCAAATACTCTTCT
TGCTCTCACCTCACTCCTCCCCTTTCTCTGATTCATTTGTTTTTGGAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3156854 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3156854 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:7238 same embryo
 EMAGE:7239 same embryo
 EMAGE:7241 same embryo
 EMAGE:7240 same embryo
 EurExpress:euxassay_004342 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS