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EMAGE:7393

Ctsa cathepsin A ( MGI:97748)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:7393 EMAGE:7393 EMAGE:7393 EMAGE:7393 EMAGE:7393
"Pseudo-wholemount" of euxassay_004532. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_004532_01 euxassay_004532_02 euxassay_004532_03 euxassay_004532_04
EMAGE:7393 EMAGE:7393 EMAGE:7393 EMAGE:7393 EMAGE:7393
euxassay_004532_05 euxassay_004532_06 euxassay_004532_07 euxassay_004532_08 euxassay_004532_09
EMAGE:7393 EMAGE:7393 EMAGE:7393 EMAGE:7393 EMAGE:7393
euxassay_004532_10 euxassay_004532_11 euxassay_004532_12 euxassay_004532_14 euxassay_004532_15
EMAGE:7393 EMAGE:7393 EMAGE:7393 EMAGE:7393 EMAGE:7393
euxassay_004532_16 euxassay_004532_17 euxassay_004532_18 euxassay_004532_19 euxassay_004532_20
EMAGE:7393 EMAGE:7393 EMAGE:7393
euxassay_004532_21 euxassay_004532_22 euxassay_004532_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:7393Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
7393_wholemount_strong.wlz
7393_wholemount_moderate.wlz
7393_wholemount_weak.wlz
7393_wholemount_possible.wlz
7393_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:7393_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T5761
Entity Detected:Ctsa, cathepsin A ( MGI:97748)
Sequence:sense strand is shown

>T5761
GCCTCCTGGAGAGCAAGGACGCAAGGAAGCAGAGATGCCCGGAACCGCGCTGTCTCCACTGCTCTTGTTG
CTGCTCCTGTCCTGGGCGTCCCGGAACGAAGCAGCTCCGGACCAGGATGAAATCGATTGTCTCCCCGGCC
TGGCCAAGCAGCCCTCTTTCCGGCAATACTCCGGCTACCTCAGAGCATCGGACTCCAAGCACTTCCACTA
CTGGTTTGTGGAGTCGCAGAACGACCCAAAGAACAGCCCCGTGGTGCTTTGGCTTAACGGGGGTCCCGGC
TGCAGCTCGCTCGATGGGCTGCTTACAGAGCACGGCCCCTTTCTGATCCAGCCAGATGGTGTCACCCTGG
AGTACAACCCCTATGCTTGGAACCTGATTGCCAACGTGCTGTATATCGAGTCCCCAGCTGGGGTGGGCTT
CTCCTACTCGGATGACAAGATGTACGTGACCAATGACACAGAGGTGGCGGAGAACAATTATGAAGCCCTT
AAAGACTTCTTCCGCCTCTTTCCGGAATACAAGGACAACAAACTTTTCCTGACAGGAGAGAGCTATGCTG
GCATCTACATCCCCACCTTGGCTGTACTGGTCATGCAGGATCCTAGCATGAACCTTCAGGGGCTGGCTGT
GGGCAATGGACTTGCCTCCTATGAGCAGAACGACAACTCCCTGGTCTACTTTGCCTACTACCATGGCCTT
CTGGGGAACAGACTTTGGACTTCACTGCAGACCCACTGCTGCGCTCAGAACAAGTGTAACTTCTATGACA
ACAAAGACCCAGAGTGTGTAAACAATCTCCTGGAGGTGTCTCGAATTGTGGGCAAATCTGGCCTCAACAT
CTACAATCTCTATGCTCCGTGTGCTGGTGGGGTGCCCGGCAGACATAGATATGAGGACACACTTGTGGTC
CAGGATTTTGGCAACATCTTCACTCGCCTGCCACTCAAGCGGAGATTTCCTGAGGCACTGATGCGTTCTG
GGGACAAGGTACGCTTGGATCCTCCCTGCACCAACACCACAGCCCCTTCCAACTACCTCAACAACCCCTA
TGTTCGGAAGGCTCTCCACATCCCCGAGTCGCTGCCCCGCTGGGACATGTGCAACTTCTTGGTGAATTTA
CAGTACCGCCGCCTCTACCAAAGCATGAACTCCCAGTACCTGAAGCTGCTCAGTTCACAGAAATACCAGA
TCCTGCTCTACAACGGAGATGTGGACATGGCCTGCAACTTCATGGGCGATGAGTGGTTTGTGGATTCACT
CAACCAGAAGATGGAGGTGCAGCGCCGGCCCTGGCTAGTGGACTACTGGGAGAGCGGAGAACAGGTAGCT
GGTTTCGTGAAGGAGTGTTCACACATCACCTTCCTCACCATCAAGGGTGCCGGACACATGGTCCCCACGG
ACAAGCCTCGAGCTGCTTTTACCATGTTCTCGAGGTTCCTGAACAAAGAGCCTTACTGATAGCGTCCGCT
GCAACCCATGGAAATCCTCAGTACCTGATCAGCCCCTCTCGGCCTCTCTCAGCAGAGAGGAGTCCTCCGC
TAATGCTCCCGTGGGGCAAGTCCTGTACTAAAACTGCCCAGACTTCTCACAGCCTGGTGCATCCCAGCCT
GGGCCTCAGGGCGTCACAGACAGCCTAGGACCAAGTGAGCACTTTGTTCCGGCCATCGTGGGGTGGCCTG
ACCTCCCCGACTGCATAAAAACTGACCACCCCAGGACCCCAACAGAGCTAGAGAAACCTAAGGAGGGGGG
TGGATGGATTCTAATTGATGGTTGACTAATTCTGGAATTAAATCGGGTATAGCTTCCAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:2651479 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:2651479 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:7389 same embryo
 EMAGE:7390 same embryo
 EMAGE:7391 same embryo
 EMAGE:7392 same embryo
 EMAGE:7388 same embryo
 EurExpress:euxassay_004532 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS