Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:7507

Tecr trans-2,3-enoyl-CoA reductase ( MGI:1915408)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:7507 EMAGE:7507 EMAGE:7507 EMAGE:7507 EMAGE:7507
"Pseudo-wholemount" of euxassay_004555. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_004555_01 euxassay_004555_02 euxassay_004555_03 euxassay_004555_04
EMAGE:7507 EMAGE:7507 EMAGE:7507 EMAGE:7507 EMAGE:7507
euxassay_004555_05 euxassay_004555_06 euxassay_004555_07 euxassay_004555_08 euxassay_004555_09
EMAGE:7507 EMAGE:7507 EMAGE:7507 EMAGE:7507 EMAGE:7507
euxassay_004555_10 euxassay_004555_11 euxassay_004555_12 euxassay_004555_13 euxassay_004555_14
EMAGE:7507 EMAGE:7507 EMAGE:7507 EMAGE:7507 EMAGE:7507
euxassay_004555_15 euxassay_004555_16 euxassay_004555_17 euxassay_004555_18 euxassay_004555_19
EMAGE:7507 EMAGE:7507 EMAGE:7507 EMAGE:7507
euxassay_004555_20 euxassay_004555_21 euxassay_004555_22 euxassay_004555_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:7507Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
7507_wholemount_strong.wlz
7507_wholemount_moderate.wlz
7507_wholemount_weak.wlz
7507_wholemount_possible.wlz
7507_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:7507_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
rib
moderate moderate
regionalmoderate expression: see section 01 02 03 04 05 06 07 18 19 20 21 22 23
submandibular gland primordium
moderate moderate
regionalmoderate expression: see section 16 17 18 19 weak expression: see section 05 06 07 08
olfactory cortex marginal layer
moderate moderate
regionalmoderate expression: see section 07 08 09 10 12 13 14 15
facial vii ganglion
moderate moderate
regionalmoderate expression: see section 04 05 20 21
glossopharyngeal ix ganglion
moderate moderate
regionalmoderate expression: see section 07 19
trigeminal v ganglion
moderate moderate
regionalmoderate expression: see section 03 04 05 06 07 08 16 17 18 19 20 21 22
vagus x ganglion
moderate moderate
regionalmoderate expression: see section 08 17 18
vestibulocochlear viii ganglion
moderate moderate
regionalmoderate expression: see section 06 07 18 19
cervico-thoracic ganglion
moderate moderate
regionalmoderate expression: see section 10 16
cervical ganglion
moderate moderate
regionalmoderate expression: see section 09 16
thoracic ganglion
moderate moderate
regionalmoderate expression: see section 12
dorsal root ganglion
strong strong
regionalstrong expression: see section 08 09 10 14 15 16 17 18 19
not examined not examined
regionalnot examined expression: see section 01 02 21 22 23
neural retina
strong strong
regionalstrong expression: see section 01 02 21 22 moderate expression: see section 23
left lung
strong strong
regionalstrong expression: see section 03 04 05 06 07 08 09 10 11 12
right lung
strong strong
regionalstrong expression: see section 13 14 15 16 17 18 19 20 21 moderate expression: see section 22 23
nucleus pulposus
strong strong
regionalstrong expression: see section 12 13
clavicle
moderate moderate
regionalmoderate expression: see section 08 09 17 18
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T7541
Entity Detected:Tecr, trans-2,3-enoyl-CoA reductase ( MGI:1915408)
Sequence:sense strand is shown

>T7541
GAGGGGGGCGGAGCCGGAGTCCGGGAGTGCTGCTCCCCGAGTGTGTGTGGAGCTGGGTGGTGTTTGGTGC
GGTACGGCGGCCACTCAGTTGCAGCAGAGCAGGTGCCATCCTGTGGAAGAACCATGAAGCACTACGAGGT
GGAGATTCGGGATGCAAAGACGAGGGAGAAGCTGTGCTTCCTGGACAAGGTAGAGCCTCAGGCCACCATT
TCTGAAATCAAGACCCTTTTCACCAAGACACACCCGCAGTGGTATCCTGCCCGCCAGTCCCTCCGCCTGG
ACCCCAAGGGGAAGTCCCTGAAAGATGAAGATGTCTTACAGAAGCTTCCTGTGGGCACCACAGCCACACT
CTACTTCCGGGACCTCGGGGCCCAGATCAGCTGGGTGACGGTCTTCCTGACGGAGTATGCCGGGCCCCTT
TTCATCTACCTGCTCTTCTACTTCCGGGTACCCTTCATTTATGGCCGCAAATACGACTTTACGTCCAGTC
GGCATACGGTGGTGCACCTCGCCTGCATGTGCCACTCGTTCCACTACATCAAGCGCCTGCTGGAGACTCT
CTTCGTGCACCGATTCTCTCACGGAACCATGCCTTTGCGAAACATCTTCAAAAACTGCACCTACTATTGG
GGCTTTGCTGCATGGATGGCTTATTACATCAACCACCCTCTCTACACACCCCCTACCTATGGAGTTCAGC
AGGTTAAGCTGGCACTGGCCGTTTTTGTGATCTGCCAGCTTGGGAACTTCTCCATCCACATGGCTCTTCG
GGACCTTCGGCCTGCTGGGTCGAAAACCAGGAAGATCCCATACCCCACCAAGAACCCCTTCACCTGGCTG
TTCCTGTTGGTGTCCTGTCCCAACTACACTTATGAGGTGGGCTCCTGGATTGGCTTTGCCATCTTGACTC
AGTGTGTCCCAGTGGCCCTCTTCTCCCTGGTGGGCTTCACCCAGATGACTATCTGGGCCAAGGGCAAACA
CCGCAGCTACCTGAAGGAGTTCCGCGACTACCCGCCCCTGCGCATGCCCATTATTCCCTTCCTGCTCTGA
GCAGCTCCTCACGGCTCTGCCCAGTAATACTCTCCACCCCTCACTGCCCCTGTCCTGATGTGTGGCTGGC
CATGGCTCTCCAGCAGCAACAATAAAACCTGCTTACCCAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:4240045 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4240045 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:7509 same embryo
 EMAGE:7508 same embryo
 EMAGE:7510 same embryo
 EMAGE:7506 same embryo
 EMAGE:7505 same embryo
 EurExpress:euxassay_004555 same experiment
 MGI:4828657 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS