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EMAGE:8525

Ttpal tocopherol (alpha) transfer protein-like ( MGI:1923330)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:8525 EMAGE:8525 EMAGE:8525 EMAGE:8525 EMAGE:8525
"Pseudo-wholemount" of euxassay_009761. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_009761_01 euxassay_009761_02 euxassay_009761_03 euxassay_009761_04
EMAGE:8525 EMAGE:8525 EMAGE:8525 EMAGE:8525 EMAGE:8525
euxassay_009761_05 euxassay_009761_06 euxassay_009761_07 euxassay_009761_08 euxassay_009761_09
EMAGE:8525 EMAGE:8525 EMAGE:8525 EMAGE:8525 EMAGE:8525
euxassay_009761_10 euxassay_009761_11 euxassay_009761_12 euxassay_009761_13 euxassay_009761_14
EMAGE:8525 EMAGE:8525 EMAGE:8525 EMAGE:8525 EMAGE:8525
euxassay_009761_15 euxassay_009761_16 euxassay_009761_17 euxassay_009761_18 euxassay_009761_19
EMAGE:8525 EMAGE:8525 EMAGE:8525
euxassay_009761_20 euxassay_009761_21 euxassay_009761_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:8525Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
8525_wholemount_strong.wlz
8525_wholemount_moderate.wlz
8525_wholemount_weak.wlz
8525_wholemount_possible.wlz
8525_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:8525_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T30623
Entity Detected:Ttpal, tocopherol (alpha) transfer protein-like ( MGI:1923330)
Sequence:sense strand is shown

>T30623
ACCCAGGTGAACGGGATTGTTATCCTTGCCGACTACAAGGGAGTGAGCTTATCAAAAGCATCTCATTTTG
GGCCTTTTATAGCCAAAAAGGTGATTGGCATCCTTCAGGATGGCTTCCCCATTCGGATAAAAGCAGTTCA
CATAGTGAACGAACCTCGGATATTTAAGGGCATTTTCGCCATCATAAAACCATTTCTGAAGGAGAAAATT
GCTAACAGGTTCTTCCTCCATGGGTCTGACCTGAACTCTCTCCACACAAACCTGCCAAGGAATATCCTCC
CCAAGGAGTATGGGGGCACAGCTGGGGAGCTGGACACTGCCTCCTGGAACGCCGTGCTGCTGGCCTCAGA
GGAGGATTTTGTGAAAGAGTTCTGCCAGCCCATGCCTGCCTGCGACAACCTCCTGGGCCAGCCCCTGCTA
CCTGAGGGGCTGATCTCAGATGCGCAGTGTGATGACTCCATGCGAGCCATGAAGTCCCAGCTCTACTCCT
GCTATTAGCCCTCTTTCGGGAGAGTACCGTGTGTGATTCCTTCCTTCCTTCCTTAGAAATGCACAGGCTG
AGATGCCAGGACCTCCGTCTTGCTCCATCCCTCTGCAACAGCATGGAGCTGCCTGCAGAGATTTAAGGCA
CGCCCATCACAGGCAGACCTTTGACTGAGTTATTCCAGGGAAGACATGGAAATTGCCCTGGTGTACTCTT
AAGTTTGCAGCTGTTACTCTGGAAGCTGTATCTGTTTCTTATGCATCTTGGAAAGAACTAAGGTCAAAGT
CACTCTGAAGTGACCAGGAGAAGACAACTTGACTGATCACAACTCTGAAACAATCACCAATCCTTAGAGG
TGGCCACACGTAAGACTTTTGAGTCTCTTTCCCATAAACCCTAGGTGTTGACCTCTTGCTCATCAGCAAA
GTTCAAGGTTCAGGCCCCAGTTGTCA
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from the plasmid IMAGE:6406780), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 59941. Forward Primer - name:059941_F_IRAV115_d06_5830472M02Rik, sequence:ACCCAGGTGAACGGGATT; Reverse Primer - name:059941_R_SP6_IRAV115_d06_5830472M02Rik, sequence:ATGACAACTGGGGCCTGA. The reverse primer contains a 5' extension containing an SP6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using SP6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:8529 same embryo
 EMAGE:8526 same embryo
 EMAGE:8527 same embryo
 EMAGE:8528 same embryo
 EMAGE:8524 same embryo
 EurExpress:euxassay_009761 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS