EMAGE mouse gene expression spatial database

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EMAGE:8550

Tbca tubulin cofactor A ( MGI:107549)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_009814. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_009814_01	euxassay_009814_02	euxassay_009814_03	euxassay_009814_04

euxassay_009814_05	euxassay_009814_06	euxassay_009814_07	euxassay_009814_08	euxassay_009814_09

euxassay_009814_10	euxassay_009814_11	euxassay_009814_12	euxassay_009814_13	euxassay_009814_14

euxassay_009814_15	euxassay_009814_16	euxassay_009814_17	euxassay_009814_18	euxassay_009814_19

euxassay_009814_20	euxassay_009814_21	euxassay_009814_22	euxassay_009814_23	euxassay_009814_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

8550_wholemount_strong.wlz

8550_wholemount_moderate.wlz

8550_wholemount_weak.wlz

8550_wholemount_possible.wlz

8550_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:8550_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

hypothalamus mantle layer

moderate

regional

moderate expression: see section 10 15 weak expression: see section 08 09 11 14 16

diencephalon lateral wall mantle layer

moderate

regional

moderate expression: see section 12 weak expression: see section 11 14

medulla oblongata basal plate mantle layer

weak

regional

weak expression: see section 09 10 17

pons mantle layer

weak

regional

weak expression: see section 08 09 11 14 17 18

spinal cord ventricular layer

weak

regional

weak expression: see section 11 12 13

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T30656
Entity Detected:	Tbca, tubulin cofactor A ( MGI:107549)
Sequence:	sense strand is shown >T30656 CTCGCGTGAGGCAGATCAAGATCAAGACCGGAGTAGTGAGGCGATTGGTCAAAGAAAGAGTGATGTACGA AAAAGAAGCAAAGCAGCAAGAAGAAAAGATTGAAAAAATGAAGGCTGAAGATGGAGAGAACTACGCCATT AAGAAGCAGGCAGAGATCCTGCAAGAGTCCCGGATGATGATCCCAGATTGCCAGCGTCGGTTAGAGGCTG CATATACTGATCTTCAGCAGATATTAGAAAGTGAAAAAGACTTGGAAGAAGCCGAGGAGTATAAAGAAGC CCGTGTAGTGCTGGATTCCGTAAAGCTAGAAGCCTGACATTTTTCTGTATGGGATGTTTTTTTGCATTAA ATCCTGGGGTCCATTCTACAATTCATTGTTTTCAGCCACTGCTGTGT
Notes:	The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from the plasmid IMAGE:6411373), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 59770. Forward Primer - name:059770_F_IRAV116_h03_Tbca, sequence:CTCGCGTGAGGCAGATCA; Reverse Primer - name:059770_R_SP6_IRAV116_h03_Tbca, sequence:AACACAGCAGTGGCTGAAAA. The reverse primer contains a 5' extension containing an SP6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using SP6 polymerase.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:8548 same embryo
	EMAGE:8547 same embryo
	EMAGE:8546 same embryo
	EMAGE:8545 same embryo
	EMAGE:8549 same embryo
	EurExpress:euxassay_009814 same experiment
	MGI:4828610 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source