Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:8631

Aldh7a1 aldehyde dehydrogenase family 7, member A1 ( MGI:108186)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:8631 EMAGE:8631 EMAGE:8631 EMAGE:8631 EMAGE:8631
"Pseudo-wholemount" of euxassay_009819. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_009819_01 euxassay_009819_02 euxassay_009819_03 euxassay_009819_04
EMAGE:8631 EMAGE:8631 EMAGE:8631 EMAGE:8631 EMAGE:8631
euxassay_009819_05 euxassay_009819_06 euxassay_009819_07 euxassay_009819_08 euxassay_009819_09
EMAGE:8631 EMAGE:8631 EMAGE:8631 EMAGE:8631 EMAGE:8631
euxassay_009819_10 euxassay_009819_11 euxassay_009819_12 euxassay_009819_13 euxassay_009819_14
EMAGE:8631 EMAGE:8631 EMAGE:8631 EMAGE:8631 EMAGE:8631
euxassay_009819_15 euxassay_009819_16 euxassay_009819_17 euxassay_009819_18 euxassay_009819_19
EMAGE:8631 EMAGE:8631 EMAGE:8631 EMAGE:8631
euxassay_009819_20 euxassay_009819_21 euxassay_009819_22 euxassay_009819_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:8631Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
8631_wholemount_strong.wlz
8631_wholemount_moderate.wlz
8631_wholemount_weak.wlz
8631_wholemount_possible.wlz
8631_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:8631_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T30880
Entity Detected:Aldh7a1, aldehyde dehydrogenase family 7, member A1 ( MGI:108186)
Sequence:sense strand is shown

>T30880
GGACCCACCTTGCCTTCTGAAAGACCCGGCCATGCTCTCATCGAAATGTGGAATCCCTTAGGCTTGGTGG
GAATCATCACTGCCTTCAATTTCCCCGTGGCTGTGTTTGGCTGGAACAATGCCATAGCCCTGATCACAGG
GAATGTCTGCCTTTGGAAAGGAGCACCGACTACGTCCCTCGTTAGTGTGGCTGTCACAAAGATCATAGCC
CAGGTTTTGGAGGACAACCTGCTGCCCGGTGCCATTTGTTCCCTGGTTTGTGGTGGAGCAGATATCGGCA
CAACGATGGCCAGAGATGAGCGTGTGAACCTGCTGTCCTTCACTGGGAGCACTCAGGTGGGGAAGGAGGT
GGCCCTCATGGTGCAGGAGAGGTTTGGGAAAAGCTTGTTGGAGCTTGGAGGAAACAACGCCATTATTGCT
TTCGAGGACGCGGACCTCAGCTTGGTTGTTCCATCAGTTCTGTTTGCCGCCGTGGGAACAGCTGGGCAAA
GGTGTACCACTGTGAGGCGACTGTTTTTGCACGAAAGCATCCATAATGAAGTTGTGGACAGACTGAGAAG
TGCCTACTCACAGATCCGTGTCGGGAACCCCTGGGACCCCAATATCCTCTATGGACCGCTCCATACCAAA
CAGGCAGTGAGCATGTTTGTGAGAGCCGTGGAAGAAGCCAAGAAACAAGGGGGCACAGTGGTCTATGGGG
GCAAGGTCATGGACCACCCTGGCAATTACGTGGAACCCACCATTGTGACCGGTCTTGCCCATGATGCGCC
CATTGTTCACCAGGAGACTTTTGCCCCAATCCTCTATGTCTTCAAATTCCAGGATGAAGAAGAGGTCTTT
GAATGGAACAATGAAGTAAAACAGGGACTTTCAAGTAGTATCTTTACCAAAGATTTGGGCAGAATCTTCC
GCTGGCTTGGACCTAAAGGTTCCGACTGTGGCATCGTGAACGTCAATATTCCTACCAGCGGGGCTGAGAT
TGGTGGT
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from the plasmid IMAGE:4191228), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 18257. Forward Primer - name:018257_F_IRAV24-27_H02_Aldh7a1, sequence:GGACCCACCTTGCCTTCT; Reverse Primer - name:018257_R_SP6_IRAV24-27_H02_Aldh7a1, sequence:CACCACCAATCTCAGCCC. The reverse primer contains a 5' extension containing an SP6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using SP6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:8630 same embryo
 EMAGE:8633 same embryo
 EMAGE:8634 same embryo
 EMAGE:8632 same embryo
 EMAGE:8635 same embryo
 EurExpress:euxassay_009819 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS