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EMAGE:9169

Nfkb1 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1, p105 ( MGI:97312)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:9169 EMAGE:9169 EMAGE:9169 EMAGE:9169 EMAGE:9169
"Pseudo-wholemount" of euxassay_017997. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_017997_01 euxassay_017997_02 euxassay_017997_03 euxassay_017997_04
EMAGE:9169 EMAGE:9169 EMAGE:9169 EMAGE:9169 EMAGE:9169
euxassay_017997_05 euxassay_017997_06 euxassay_017997_07 euxassay_017997_08 euxassay_017997_09
EMAGE:9169 EMAGE:9169 EMAGE:9169 EMAGE:9169 EMAGE:9169
euxassay_017997_10 euxassay_017997_11 euxassay_017997_12 euxassay_017997_13 euxassay_017997_14
EMAGE:9169 EMAGE:9169 EMAGE:9169 EMAGE:9169 EMAGE:9169
euxassay_017997_15 euxassay_017997_16 euxassay_017997_17 euxassay_017997_18 euxassay_017997_19
EMAGE:9169
euxassay_017997_20

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:9169Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
9169_wholemount_strong.wlz
9169_wholemount_moderate.wlz
9169_wholemount_weak.wlz
9169_wholemount_possible.wlz
9169_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:9169_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T50752
Entity Detected:Nfkb1, nuclear factor of kappa light polypeptide gene enhancer in B-cells 1, p105 ( MGI:97312)
Sequence:sense strand is shown

>T50752
CTTTGAGCCTCTCTATGACCTGGACGACTCTTGGGAGAAGGCTGGAGAAGATGAGGGAGTGGTGCCAGGT
ACCACACCCCTGGACATGGCTGCCAACTGGCAGGTATTTGACATACTAAATGGGAAACCGTATGAGCCTG
TGTTCACATCTGATGATATACTACCACAAGGGGACATGAAGCAGCTGACAGAAGACACGAGGCTACAACT
CTGCAAACTGCTGGAAATTCCTGATCCAGACAAAAACTGGGCCACTCTGGCACAGAAGTTGGGTCTGGGG
ATATTGAACAATGCCTTCCGGCTGAGTCCTGCTCCTTCTAAAACTCTCATGGACAACTATGAGGTCTCTG
GGGGTACCATCAAAGAGCTGATGGAGGCCCTGCAACAGATGGGCTACACAGAGGCCATTGAAGTGATCCA
GGCAGCCTTCCGCACCCCGGCAACCACAGCCTCCAGCCCCGTGACCACTGCTCAGGTCCACTGTCTGCCT
CTCTCGTCTTCCTCCACGAGGCAGCACATAGATGAACTCCGGGATAGTGACAGCGTCTGTGACAGTGGTG
TGGAGACATCCTTCCGCAAACTCAGCTTTACAGAGTCTCTTACTGGAGACAGCCCACTGCTATCTCTGAA
CAAAATGCCCCACGGTTATGGGCAGGAAGGACCTATTGAAGGCAAAATTTAGCCTGCTGGCCGTTCCCCC
ACACTGTGTAAACCAAAGCCCTGACAGTCCATTGCATCGTCCCAAAGGAGGAAGGCAAAGCGAATCCAAA
GGTGCTGGAGAATCGCCGGCCTGCAGGGTCACTCGATTTCATTCAAGGCCTTCCGAATTTGGCGTCCTTC
TTGGTTCTGAAATGAAATGTAGTTGCCACGCACAGACGGTGTCTAGCAATCATGGCGCTCGCTCGCTCAG
CTGCACTCTATGGCTCAGGTGCAGTGTCTTGAGCTTTCTCTGCTGCTACTGGATCACATTTGCTTTGTGT
TGTTACTGCTGTCCCTCCGCTGGGTTCCTGCTGTCATTAAAAGGTGTCGCTGTCCCCACCCGGTGTCCTT
TCTAGCCATCTAC
Notes:The probe template was PCR amplified from E14.5 mouse embryo cDNA using gene specific primers. Forward Primer - name:unspecified, sequence:CTTTGAGCCTCTCTATGACCTGG; Reverse Primer - name:unspecified, sequence:GTAGATGGCTAGAAAGGACACCG. The reverse primer contains a 5' extension containing an unspecified RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using unspecified polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:NMRI
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:9171 same embryo
 EMAGE:9170 same embryo
 EurExpress:euxassay_017997 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS