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EMAGE:9288

Atp6v0a1 ATPase, H+ transporting, lysosomal V0 subunit A1 ( MGI:103286)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:9288 EMAGE:9288 EMAGE:9288 EMAGE:9288 EMAGE:9288
"Pseudo-wholemount" of euxassay_018132. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_018132_01 euxassay_018132_02 euxassay_018132_03 euxassay_018132_04
EMAGE:9288 EMAGE:9288 EMAGE:9288 EMAGE:9288 EMAGE:9288
euxassay_018132_05 euxassay_018132_06 euxassay_018132_07 euxassay_018132_08 euxassay_018132_09
EMAGE:9288 EMAGE:9288 EMAGE:9288 EMAGE:9288 EMAGE:9288
euxassay_018132_10 euxassay_018132_11 euxassay_018132_12 euxassay_018132_13 euxassay_018132_14
EMAGE:9288 EMAGE:9288 EMAGE:9288 EMAGE:9288 EMAGE:9288
euxassay_018132_15 euxassay_018132_16 euxassay_018132_17 euxassay_018132_18 euxassay_018132_19
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euxassay_018132_20 euxassay_018132_21 euxassay_018132_22 euxassay_018132_23 euxassay_018132_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:9288Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
9288_wholemount_strong.wlz
9288_wholemount_moderate.wlz
9288_wholemount_weak.wlz
9288_wholemount_possible.wlz
9288_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:9288_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T50126
Entity Detected:Atp6v0a1, ATPase, H+ transporting, lysosomal V0 subunit A1 ( MGI:103286)
Sequence:sense strand is shown

>T50126
TCCTACAGGGGGACACTGCTTATGAAACACATCCCACTCCACTAGCAGGGACAGTCAGGAAGATGCTGCG
GTCATCCCTTGCCCAGCCCTCTCCAGTTAATATTCAGGAAATTAGGCTGGCCCCACCTGGACCATCCCAA
AGGCCCCAGGATAGCCACCACCCTCCTAAGCACCCCCTCCTCGAGCCCTGTTGGCGCAGCATAGCATCCC
TGGGACTGGGGGGGTCTCACCGACTTGCAGCACTGGGCTTCCGGATCTTAGGTTCCCTCCACCCAGTCTG
TAGGTGAATGGGCCTTGCCCAACACTACACCCCAAGGCAGAAGTTAAAATTGGCCCATCTCTGAGCCCTT
CTGCACCCTGATCATGATGTCCTGAGGCTGTGGTCAGTAAGGTTGGTTCTGCTGGCAGGCCTGCCTTGAT
CTGCCCACTGAGACTCCCTCCCCAAGCCCCGCACTGACCCCAGGTTTCAGGAGTGGTGTCCTGGGCAGGG
AAGGTCATTTACAATTTGCTAAGCGGAGGTGACTGTTGGGCTGCCAGCGCAGGTATGGGAGCGCTGCCCA
GGCCTGCCAAGCCCTCGCCGGCTACCTCATGTACTGTGGATCTCAGACCCTTCTAATCATGTGCTGACTC
CTGCAATTCACTCACTGCCTTCCCTGTGGAAGTGACACTAAATCAGCAAGGCCCCTCCCCTCCCCCACCC
AGGTGCTCATGAGAACTACCCCCACACTCGCCCAGGCAGGACCGGCCCATGGTGACCTTGTTTGAACCCC
TCTGTCC
Notes:The probe template was PCR amplified from E14.5 mouse embryo cDNA using gene specific primers. Forward Primer - name:unspecified, sequence:CACCTTGGAGGAGGATGGTA; Reverse Primer - name:unspecified, sequence:GACAGAGGGGTTCAAACAA. The reverse primer contains a 5' extension containing an unspecified RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using unspecified polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:NMRI
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:9290 same embryo
 EMAGE:9291 same embryo
 EMAGE:9289 same embryo
 EMAGE:9287 same embryo
 EMAGE:9292 same embryo
 EurExpress:euxassay_018132 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS