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EMAGE:9883

Fyn Fyn proto-oncogene ( MGI:95602)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:9883 EMAGE:9883 EMAGE:9883 EMAGE:9883 EMAGE:9883
"Pseudo-wholemount" of euxassay_018823. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_018823_01 euxassay_018823_02 euxassay_018823_03 euxassay_018823_04
EMAGE:9883 EMAGE:9883 EMAGE:9883 EMAGE:9883 EMAGE:9883
euxassay_018823_05 euxassay_018823_06 euxassay_018823_07 euxassay_018823_08 euxassay_018823_09
EMAGE:9883 EMAGE:9883 EMAGE:9883 EMAGE:9883 EMAGE:9883
euxassay_018823_10 euxassay_018823_11 euxassay_018823_12 euxassay_018823_13 euxassay_018823_14
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euxassay_018823_15 euxassay_018823_16 euxassay_018823_17 euxassay_018823_18 euxassay_018823_19
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euxassay_018823_20 euxassay_018823_21 euxassay_018823_22 euxassay_018823_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:9883Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
9883_wholemount_strong.wlz
9883_wholemount_moderate.wlz
9883_wholemount_weak.wlz
9883_wholemount_possible.wlz
9883_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:9883_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T50428
Entity Detected:Fyn, Fyn proto-oncogene ( MGI:95602)
Sequence:sense strand is shown

>T50428
TAATGGGCTGTGTGCAATGTAAGGATAAAGAAGCAGCGAAACTGACAGAGGAGAGGGACGGCAGCCTGAA
CCAGAGCTCTGGGTACCGCTATGGCACAGACCCCACCCCTCAGCACTACCCCAGCTTCGGCGTGACCTCC
ATCCCGAACTACAACAACTTCCACGCAGCTGGGGGCCAGGGACTCACCGTCTTTGGGGGTGTGAACTCCT
CCTCTCACACTGGGACCCTACGCACGAGAGGAGGGACAGGAGTGACACTGTTTGTGGCGCTTTATGACTA
TGAAGCACGGACGGAAGATGACCTGAGTTTTCACAAAGGAGAAAAATTTCAAATATTGAACAGCTCGGAA
GGAGATTGGTGGGAAGCCCGCTCCTTGACAACCGGGGAAACTGGTTACATTCCCAGCAATTACGTGGCTC
CAGTTGACTCCATCCAGGCAGAAGAGTGGTACTTTGGAAAACTTGGCCGCAAAGATGCTGAGAGACAGCT
CCTGTCCTTTGGAAACCCAAGAGGTACCTTTCTTATCCGCGAGAGCCAAACCACCAAAGGTGCCTACTCA
CTTTCCATCCGTGATTGGGATGATATGAAAGGGGACCACGTCAAACATTATAAAATCCGCAAGCTTGACA
ATGGTGGATACTATATCACAACGCGGGCCCAGTTTGAAACACTTCAGCAACTGGTACAGCATTACTCAGA
GAAAGCTGATGGTTTGTGTTTTAACTTAACTGTGGTTTCATCAAGTTGTACCCCACAAACTTCTGGATTG
GCTAAAGATGCTTGGGAAGTTGCACGTGACTCGTTGTTTCTGGAGAAGAAGCTGGGGCAGGGGTGTTTCG
CTGAAGTGTGGCTTGGTACCTGGAATGGAAATACAAAAGTAGCCATAAAGACCCTTAAGCCAGGCACCAT
GTCTCCGGAGTCCTTCCTGGAGGAGGCGCAGATCATGAAGAAGCTGAAGCATGACAAGCTGGTGCAGCTC
TACGCGGTCGTGTCTGAGGAGCCCATTTACATCGTCACGGAGTACATGAGCAAAGGAAGTTTGCTTGACT
TCTTAAAAGATGGTGAAGGAAGAGCTCTGAAGTTGCCAAACCTTGTGGAC
Notes:The probe template was PCR amplified from E14.5 mouse embryo cDNA using gene specific primers. Forward Primer - name:unspecified, sequence:TAATGGGCTGTGTGCAATGT; Reverse Primer - name:unspecified, sequence:GTCCACAAGGTTTGGCAACT. The reverse primer contains a 5' extension containing an unspecified RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using unspecified polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:NMRI
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:9884 same embryo
 EMAGE:9882 same embryo
 EurExpress:euxassay_018823 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS