EMAGE mouse gene expression spatial database

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EMAGE:9899

Yaf2 YY1 associated factor 2 ( MGI:1914307)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_008132. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_008132_01	euxassay_008132_02	euxassay_008132_03	euxassay_008132_04

euxassay_008132_05	euxassay_008132_06	euxassay_008132_07	euxassay_008132_08	euxassay_008132_09

euxassay_008132_10	euxassay_008132_11	euxassay_008132_12	euxassay_008132_13	euxassay_008132_14

euxassay_008132_15	euxassay_008132_16	euxassay_008132_17	euxassay_008132_18	euxassay_008132_19

euxassay_008132_20	euxassay_008132_21	euxassay_008132_22	euxassay_008132_23	euxassay_008132_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

9899_wholemount_strong.wlz

9899_wholemount_moderate.wlz

9899_wholemount_weak.wlz

9899_wholemount_possible.wlz

9899_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:9899_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

facial vii ganglion

weak

regional

weak expression: see section 04 20 21

glossopharyngeal ix ganglion

weak

regional

weak expression: see section 05 06 17 18

trigeminal v ganglion

weak

regional

weak expression: see section 03 04 05 06 07 08 09 17 18 19 20 21 22

vagus x ganglion

weak

regional

weak expression: see section 07

dorsal root ganglion

weak

regional

weak expression: see section 05 06 07 08 09 10 11 12 15 16 17 18

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T20
Entity Detected:	Yaf2, YY1 associated factor 2 ( MGI:1914307)
Sequence:	sense strand is shown >T20 TTTTTTTTTTTTTTAAGTCATAAAAAATATTTTATTGGTGATTATACATAAGTGAGTGGGGCCGTAAATA CTTTTTATTTCAAGATATTGATAAGTGCATAAATTGAAGGTTGTATCTGGAACTAGAGTACTGTGGTTTC CATATGAATTGTTTTATTTAGTAAAAGGCCAATTAAGCTGACTTAGGAGTGACACCTCAGTTCTGTGTAA TAGTTACATGTTTATATCAACTAGAGTCACATGTCTGTGACCCTGGGTAGGGTTGGAACAGGGAGACAGT GATAAAACTATCATTAAGTTAGAGCGTTTGCAAGTATGGCAAGTTCTTTCCTGCTTCTGCCAGATGCTTG CTTCTTTAACTCTAATGTCTTAGAGGATGCAGGAAATACCAGTGTTCAACGACAACAGCGCTAACCCTGA TCAGAAAGCTAAACAAGCCACGTCGTACTGTCTACTAGTGAACAGTACAATAAATTGATGCTTTGAAAAA TAAGCAAACTAACAAACA
Notes:	The probe template was PCR amplified from IMAGE:836422 using vector specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T3 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:836422 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	NMRI
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:9898 same embryo
	EMAGE:9897 same embryo
	EMAGE:9900 same embryo
	EurExpress:euxassay_008132 same experiment
	MGI:4829249 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source