EMAGE mouse gene expression spatial database

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EMAGE:10465

Emr1 EGF-like module containing, mucin-like, hormone receptor-like sequence 1 ( MGI:106912)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_000685. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_000685_01	euxassay_000685_02	euxassay_000685_03	euxassay_000685_04

euxassay_000685_05	euxassay_000685_06	euxassay_000685_07	euxassay_000685_08	euxassay_000685_09

euxassay_000685_10	euxassay_000685_11	euxassay_000685_12	euxassay_000685_13	euxassay_000685_14

euxassay_000685_15	euxassay_000685_16	euxassay_000685_17	euxassay_000685_18	euxassay_000685_19

euxassay_000685_20	euxassay_000685_21	euxassay_000685_22	euxassay_000685_23	euxassay_000685_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

10465_wholemount_strong.wlz

10465_wholemount_moderate.wlz

10465_wholemount_weak.wlz

10465_wholemount_possible.wlz

10465_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:10465_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T1434
Entity Detected:	Emr1, EGF-like module containing, mucin-like, hormone receptor-like sequence 1 ( MGI:106912)
Sequence:	sense strand is shown >T1434 CCTCGAGNCTGTTGGCCTACTGGTTCAAAGACCTAGAGGTGACATGTGAAGATATTGATGAGTGCACCCA AGATCCATTACAATGTGGACTGAATTCTGTCTGCACCAATGTACCAGGCTCCTACATCTGTGGCTGCCTC CCTGACTTTCAAATGGATCCAGAAGGCTCCCAAGGATATGGAAACTTCAACTGCAAAAGGATCCTCTTCA AGTGTAAGGAAGACTTGATACTCCAAAGTGAGCAGATACAGCAATGCCAAGCAGTGCAGGGCAGGGATCT TGGTTATGCTTCCTTCTGTACACTTGTGAATGCTACCTTCACAATCCTTGATAATACCTGTGAGAACAAA AGTGCCCCAGTGTCCTTACAGAGTGCAGCTACAAGTGTCTCCCTCGTGCTGGAGCAAGCGACCACATGGT TTGAGCTCAGCAAGGAGGAGACATCCACTCTGGGCACCATCTTGCTGGAGACTGTGGATCTTGCTGAAAG CACCATGTTAGCTGCTCTTCTGATACCCTCTGGGAATGCCAGTCAGATGATTCAGACGGAGTACCTAGAC ATCGAAAGC
Notes:	The probe template was PCR amplified from IMAGE:2503182 using vector specific primers. Forward Primer - name:T7-pME18S-FL3-fw, sequence:CGTAATACGACTCACTATAGGGCCTTCTGCTCTAAAAGCTGCG; Reverse Primer - name:T3-pME18S-FL3-rv, sequence:CAAATTAACCCTCACTAAAGGGCGACCTGCAGCTCGAGCAC. Anti-sense probe was then transcribed from the PCR amplified template using T3 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:2503182 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:10462 same embryo
	EMAGE:10463 same embryo
	EMAGE:10461 same embryo
	EMAGE:10460 same embryo
	EMAGE:10464 same embryo
	EMAGE:10459 same embryo
	EurExpress:euxassay_000685 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source