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EMAGE:10642

Chchd7 coiled-coil-helix-coiled-coil-helix domain containing 7 ( MGI:1913683)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:10642 EMAGE:10642 EMAGE:10642 EMAGE:10642 EMAGE:10642
"Pseudo-wholemount" of euxassay_003224. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_003224_01 euxassay_003224_02 euxassay_003224_03 euxassay_003224_04
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euxassay_003224_05 euxassay_003224_06 euxassay_003224_07 euxassay_003224_08 euxassay_003224_09
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euxassay_003224_10 euxassay_003224_11 euxassay_003224_12 euxassay_003224_13 euxassay_003224_14
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euxassay_003224_15 euxassay_003224_16 euxassay_003224_17 euxassay_003224_18 euxassay_003224_19
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euxassay_003224_20 euxassay_003224_21 euxassay_003224_22 euxassay_003224_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:10642Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
10642_wholemount_strong.wlz
10642_wholemount_moderate.wlz
10642_wholemount_weak.wlz
10642_wholemount_possible.wlz
10642_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:10642_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T5452
Entity Detected:Chchd7, coiled-coil-helix-coiled-coil-helix domain containing 7 ( MGI:1913683)
Sequence:sense strand is shown

>T5452
CCACGCGTCCGTGCTGGCTGAGTGGTGGCCTGTGGTGAGTGGTCTCCGGCCCCTCCCTCCCTGGACAGCA
GGCCCGGGACAGCACTGCGCCGAGGGCAGACCCTAGTTCGTGGCGCCAAACCCTCCGCGGCGCGGCATGC
TCCTGCCGCTACTCACGCCACGCGATTCGTCCGGCCGGGGCAGCGGAAGGTGACCCCATGCAGGTTTATG
GGTGCTGTATTTCTGTTTCCGGATTTAACACTCACAGACCAGACTCTGAGAAGCCTGGGGGGCCTGGACT
TGTTCAGTAACGTGCCCTTCCCCCACTGCGGATCAAAGCTGCGAAGAGTGGGAAATCAGGAACTTTTTTG
TAAGAAGACAAGATGCCCATGGTCACTCGGCGGCTGAGAGATCCTGACATAAACCCTTGCTTGTCGGAAT
CTGATGCTTCTACCAGATGCATGGATGAAAATAACTATGACAGGGAAAGGTGTTCCAGTTACTTCTTGAA
GTACAAAAACTGCCGGCGATTCTGGAATTCTGTCATGATCCAAAGAAGACAAAATGGAGTTCAGCCATCT
ATGCCTACAGCAGCAGAAAGAGACGAAATTTTGGGAGCAATGCAAAAGATGCCCTACTGAGTATTTGCAT
TAAAATTGTTTCTATAACTTGAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:5370748 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5370748 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:10641 same embryo
 EMAGE:10637 same embryo
 EMAGE:10640 same embryo
 EMAGE:10639 same embryo
 EMAGE:10638 same embryo
 EurExpress:euxassay_003224 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS