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EMAGE:10855

BC003266 cDNA sequence BC003266 ( MGI:1933141)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:10855 EMAGE:10855 EMAGE:10855 EMAGE:10855 EMAGE:10855
"Pseudo-wholemount" of euxassay_003436. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_003436_01 euxassay_003436_02 euxassay_003436_03 euxassay_003436_04
EMAGE:10855 EMAGE:10855 EMAGE:10855 EMAGE:10855 EMAGE:10855
euxassay_003436_05 euxassay_003436_06 euxassay_003436_07 euxassay_003436_08 euxassay_003436_09
EMAGE:10855 EMAGE:10855 EMAGE:10855 EMAGE:10855 EMAGE:10855
euxassay_003436_10 euxassay_003436_11 euxassay_003436_12 euxassay_003436_13 euxassay_003436_14
EMAGE:10855 EMAGE:10855 EMAGE:10855 EMAGE:10855 EMAGE:10855
euxassay_003436_15 euxassay_003436_16 euxassay_003436_17 euxassay_003436_18 euxassay_003436_19
EMAGE:10855 EMAGE:10855 EMAGE:10855 EMAGE:10855 EMAGE:10855
euxassay_003436_20 euxassay_003436_21 euxassay_003436_22 euxassay_003436_23 euxassay_003436_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:10855Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
10855_wholemount_strong.wlz
10855_wholemount_moderate.wlz
10855_wholemount_weak.wlz
10855_wholemount_possible.wlz
10855_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:10855_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6225
Entity Detected:BC003266, cDNA sequence BC003266 ( MGI:1933141)
Sequence:sense strand is shown

>T6225
CGGACGCGTGGGCGGACGCGTGGGCTCCCGGCTAGCGGGCGCAGCGCGGGACCTGTCCGGGGTGTGCGGG
CTGGACCGCAGATGTCATGTGGCCTGTGCTTTGGACCGTGGTGCGAACCTATGCCCCCTATGTCACCTTC
CCTGTGGCCTTTGTGGTCGGGGCTGTGGGCTACCACCTGGAATGGTTCATCAGGGGAAAGACTCCTCAGC
CTGTGGAGGAGGAGAAGAGCATCCTGGAGCGCCGAGAGGACCGAAAGCTGGATGAGATGCTAGGCAAGGA
CCACACTCAGGTGGTGAGCCTTAAGGACAAGCTAGAATTTGCCCCTAAAGCAGTCCTGAACAGAAACCGT
CCAGAGAAGAACTAATGGAGGGCCCAGGTCCCTGTGGTGCACAGGGATATGCCATGTCCTGCCGCCATGT
CGACCCAGCTTCAGAACACACATCTGATTTGCTTTGCTGCTCACTCCGGCCCCCTGAGCACCCACAGCCA
CTCGTGTACTGGCTGGTCCTGTATGGCTGCAGAGCGGCAGCAGTAGGGGCCAGCAATGAGGAAGACTGCG
TCTGCTCAGTGGGCTCTCTCTGTGCCTGGACAGGCTTCTGATCTTACCTGGGAGCCCTGCAGGGAGGAGC
CCTGGGGAATGAACCTTGGTCTCAGGCTCCCCGGGAGGGGCTTGGCCTCAACTGGGAATGGTTGGGGTTT
ATCGTTGCCATTAGGAGGGGCACCTCCATGTCTAGTTCTCGTTTTTGCACTGAAAAGAATTCAGGAATGT
CCCTGGCTCCCTTGATGAGGCTTTCTTATTTTCCTGTGTGCATTCTTCCCTTTACTGGCTCAGGCGTGGG
ATTCTCAGGGGAAGGAAAGCATGCTTCTCTTGTGGGGAGCTCAGGCTGTTTACCTCGGGGCCAGCGGGGC
ATAAGCCTGGAAATAATCACTGTCTTCCACCCTTCCTCACTGGAGTGGGGACTCAATTAAAGTGGCACCT
GGCACATAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3498902 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3498902 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:10858 same embryo
 EMAGE:10856 same embryo
 EMAGE:10857 same embryo
 EMAGE:10854 same embryo
 EMAGE:10853 same embryo
 EurExpress:euxassay_003436 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS