EMAGE mouse gene expression spatial database

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EMAGE:10986

Serpinb10-ps serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 10, pseudogene ( MGI:2138648)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_001205. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_001205_01	euxassay_001205_02	euxassay_001205_03	euxassay_001205_04

euxassay_001205_05	euxassay_001205_06	euxassay_001205_07	euxassay_001205_08	euxassay_001205_09

euxassay_001205_10	euxassay_001205_11	euxassay_001205_12	euxassay_001205_13	euxassay_001205_14

euxassay_001205_15	euxassay_001205_16	euxassay_001205_17	euxassay_001205_18	euxassay_001205_19

euxassay_001205_20	euxassay_001205_21	euxassay_001205_22	euxassay_001205_23	euxassay_001205_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

10986_wholemount_strong.wlz

10986_wholemount_moderate.wlz

10986_wholemount_weak.wlz

10986_wholemount_possible.wlz

10986_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:10986_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

embryo

moderate

regional

moderate expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24

esophagus

weak

regional

weak expression: see section 14 15

oral epithelium

weak

regional

weak expression: see section 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23

liver lobe

moderate

single cell

moderate expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T4711
Entity Detected:	Serpinb10-ps, serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 10, pseudogene ( MGI:2138648)
Sequence:	sense strand is shown >T4711 TTTCCTAAAAGCACAATTTGTCAAGTTTGCTCCAGGAGAGGAAAATAAGGTTGCCCAATGGCCTCACTAG CAGTATCCATCAACCAGTTTGCTCTGGAGTTTAGCAAAAAGCTAGCTGAGTCTGCTGAGGGTAGAAACAT CTTCTTTTCCCCCTGGGGCATCTCAACTGCTTTGGCTATGCTATATTTGGGTACCAAAGGGACTACTGCA GACCAGATGGCCCAGGTACTTCAATTTAGCAGTGTTGAAGACTTCAAATCTTGTCCTGATAGTGAAAAGA AAAGGAAAATGGAATTTAACTCAGGCAAATTTGAAGAAATACAGTCCGACTTCCAGACCCTTGCTGCTGA AATCCTCAAACCTGGAAATTCTTACGTTCTTAAAACAGCTAACAGGATATATGGAGAGAAAACATATCCA TTTCATAATAAATATTTGGAGGACATGAAAACGTACTTTGGGGCAGAACCACAATCTGTTAACTTTGTTG AAGCTTCTGGACAGATCAGGAAGGAGATCAACTCCTGGGTTGGAAGCCAGACTGGAGGTAAAATTCCAAA TCTCCTCCCAGATGACTCAGTCGACACCAAGACTAAAATGGTTCTGGTGAATGCCCTTTATTTTAAAGGA ACCTGGGAGCATCAGTTCTCAGTGAAAAACACCACCGAAAGGCCTTTCAGAGTAAACAAGACCACAAGCA AACCAGTGCAAATGATGTCAATGAAACAGAGTCTTCAAGTCTTCCACATTGAGGAGCTGCAAACCATAGG CCTTCAACTCCACTATCAGAACCGTGACCTCAGCCTGCTTCTACTGCTTCCAGAAGCAATAGATGGCCTG GAACAGCTGGAGAGAGCCATTACATATGAGAAACTAGATAAGTGGACCAGTGCAGACATGATGGACACAT ACGAAGTGCAGCTGTACCTCCCCAAGTTCAAGATGGAGGAGAGTTATGACCTCAAGTCAGCCCTGAGAGG TATGGGAATGACCGACGTTTTCAGCCAGAGTAAAGCTGATTTCTCAAACATGACTTCAGAGAGAAATCTA TTTTTGTCCAATGTTTTCCATAAGACTTTTCTGGAAATAAATGAAGAAGGCACAGAGGCTGCAGCTGGCA CTGGAAGTGAAATCAGTGTTCGAATTAAGGCACCTTCCATTGAATTAAATGTAGATCATCCATTTCTATT TTTCATCAGGCACAACAAAACCAAAAGCATTCTTTTTTGTGGAAGATTCTGCTCGCCCTAAACTCTGCAT CTCTCATTTAATGAAAACATCTTATAGTATAAAACAAACAAACACACAAAAACCTATATTATGAGACGGA AAATCAGACATCACAAAATCAGCCCATAGCCTATACACATTTCATGCTTGTATATTAATAAATGAACCTT CAGAGAATGTGTTCTTGTGATCCTCTCAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:5035202 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5035202 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:10987 same embryo
	EMAGE:10990 same embryo
	EMAGE:10988 same embryo
	EMAGE:10985 same embryo
	EMAGE:10989 same embryo
	EurExpress:euxassay_001205 same experiment
	MGI:4827986 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source