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EMAGE:11046

Slamf8 SLAM family member 8 ( MGI:1921998)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:11046 EMAGE:11046 EMAGE:11046 EMAGE:11046 EMAGE:11046
"Pseudo-wholemount" of euxassay_003066. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_003066_01 euxassay_003066_02 euxassay_003066_03 euxassay_003066_04
EMAGE:11046 EMAGE:11046 EMAGE:11046 EMAGE:11046 EMAGE:11046
euxassay_003066_05 euxassay_003066_06 euxassay_003066_07 euxassay_003066_08 euxassay_003066_09
EMAGE:11046 EMAGE:11046 EMAGE:11046 EMAGE:11046 EMAGE:11046
euxassay_003066_10 euxassay_003066_11 euxassay_003066_12 euxassay_003066_13 euxassay_003066_14
EMAGE:11046 EMAGE:11046 EMAGE:11046 EMAGE:11046 EMAGE:11046
euxassay_003066_15 euxassay_003066_16 euxassay_003066_17 euxassay_003066_18 euxassay_003066_19
EMAGE:11046 EMAGE:11046 EMAGE:11046 EMAGE:11046 EMAGE:11046
euxassay_003066_20 euxassay_003066_21 euxassay_003066_22 euxassay_003066_23 euxassay_003066_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:11046Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
11046_wholemount_strong.wlz
11046_wholemount_moderate.wlz
11046_wholemount_weak.wlz
11046_wholemount_possible.wlz
11046_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:11046_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4849
Entity Detected:Slamf8, SLAM family member 8 ( MGI:1921998)
Sequence:sense strand is shown

>T4849
GCCTAGGATGGATATCCTGGTTTGCTGAGGGAATCTTCCAAGGGAGGACGACGGCCATGTGGTCCCTCTG
GAGTCTTCTTCTCTTTGAAGCTCTCCTTCCCGTTGTGGTTGTCAGTGTCCAAGTGCTAAGCAAGGTAGGG
GACTCAGAGCTGCTGGTGGCCGAGTGTCCTCCGGGCTTCCAAGTGCGTGAGGCTATCTGGCGATCTCTGT
GGCCATCGGAGGAGCTCCTGGCCACATTTTTCCGAGGTTCCTTGGAGACTCTGTACCACTCTCGTTTCCT
GGGCCGAGTCCAGCTATATGACAACCTCAGCCTGGAGCTTGGACCCCTGAAACCTGGAGACAGCGGCAAT
TTCTCTGTGCTGATGGTGGATACAGGGGGTCAAACCTGGACCCAGACCCTGTATCTCAAGGTGTACGATG
CAGTACCCAAGCCCGAGGTTCAAGTGTTCACTGCTGCAGCAGAGGAGACCCAACCCCTCAATACCTGTCA
GGTCTTCTTGTCCTGCTGGGCCCCCAACATCAGTGACATAACCTACAGCTGGCGATGGGAGGGGACAGTG
GACTTCAATGGTGAAGTGCGCAGCCATTTCTCAAATGGACAGGTGTTAAGTGTCTCACTGGGACTGGGGG
ACAAGGATGTGGCCTTTACCTGCATTGCCTCCAATCCTGTCAGCTGGGATATGACCACAGTCACCCCCTG
GGAGAGCTGCCATCACGAGGCAGCCTCCGGGAAGGCCTCCTACAAGGATGTGCTACTGGTAGTAGTGCCA
ATTACACTGTTCCTGATCCTGGCTGGTCTCTTTGGGGCATGGCACCATGGCCTCTGCTCAGGGAAGAAGA
AGGATGCTTGCACTGACGGGGTGCTTCCAGAGACAGAGAATGCCCTCGTATAGAGGATGTCATGAGGGAC
AACATAAACTGGTGCTTGGACCATGATGAGATGCCCTGCTCAGCCACGTGATGCTCCACACCTGGACACC
TCCAGGATCCTCATAACTGCCACAAGTCGGCCTGCCTCTAGCGGACAGCCAAGAAAACCACCATCCTGGA
ACGTCACCCTGGCCCAAACTTCCTCCTTCCTCCATCCTGTTCGCACATGCCGGATCCTCTCTGGGCAAGG
TGAACTAGTAGGATGCTTCCTTCAGAACACAGGACTTTCTCTAGGATCCACAGAGACATTGATTATCCAA
GGCATCCATTCTTCTATCACTGTACATAAGGTCTTGCCCAACAGCCACCAAGGGACGGCCTCCAGGCCAG
GACCTTGGCTCAAAGAGAGATGAGATGTTTGAACTAACATGGAAATTGAGCTAACCATTGCCAACTCCAA
CTCCAGCCCCTGGGGTCTGAGTTCCTTGTGTTCAAGATGTTATTATAAGAAAAGGCAAAGAACAGGAAAT
GATGGAGGGTGGGGCATTCTCTTTCTGGTCTGAAGGACTTTAAGATTATCTGAGTTCAAGGGCCATCAAA
AGTAAATTGAGATTACAGATGATGAGGGGTTGGTAGCTAATGTGCCATGTTGGGGTCAAAGCCATTTTTC
TGGTAGCACTATATTAATAGACACCTTTGTTGCCATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:5066283 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5066283 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:11045 same embryo
 EMAGE:11048 same embryo
 EMAGE:11047 same embryo
 EMAGE:11043 same embryo
 EMAGE:11044 same embryo
 EurExpress:euxassay_003066 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS