Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:11048

Chchd4 coiled-coil-helix-coiled-coil-helix domain containing 4 ( MGI:1919420)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:11048 EMAGE:11048 EMAGE:11048 EMAGE:11048 EMAGE:11048
"Pseudo-wholemount" of euxassay_003048. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_003048_01 euxassay_003048_02 euxassay_003048_03 euxassay_003048_04
EMAGE:11048 EMAGE:11048 EMAGE:11048 EMAGE:11048 EMAGE:11048
euxassay_003048_05 euxassay_003048_06 euxassay_003048_07 euxassay_003048_08 euxassay_003048_09
EMAGE:11048 EMAGE:11048 EMAGE:11048 EMAGE:11048 EMAGE:11048
euxassay_003048_10 euxassay_003048_11 euxassay_003048_12 euxassay_003048_13 euxassay_003048_14
EMAGE:11048 EMAGE:11048 EMAGE:11048 EMAGE:11048 EMAGE:11048
euxassay_003048_15 euxassay_003048_16 euxassay_003048_17 euxassay_003048_18 euxassay_003048_19
EMAGE:11048 EMAGE:11048 EMAGE:11048 EMAGE:11048 EMAGE:11048
euxassay_003048_20 euxassay_003048_21 euxassay_003048_22 euxassay_003048_23 euxassay_003048_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:11048Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
11048_wholemount_strong.wlz
11048_wholemount_moderate.wlz
11048_wholemount_weak.wlz
11048_wholemount_possible.wlz
11048_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:11048_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4852
Entity Detected:Chchd4, coiled-coil-helix-coiled-coil-helix domain containing 4 ( MGI:1919420)
Sequence:sense strand is shown

>T4852
GGCGAGGGAGGTCACGGCGTGAAGGTGTATCCGCTCCAGCCGCGCCCGCTGCCTCTGCGAGCTGCAGAGG
ACTGTCGGGAACAACCATGTCCTACTGCCGGCAGGAAGGGAAGGATCGGATCATATTTGTGACCAAAGAA
GACCATGAAACTCCTAGCAGTGCCGAGCTGGTGGCTGATGACCCCAATGATCCCTATGAGGAGCACGGGT
TGATACTGCCTAACGGAGATATTAACTGGAATTGTCCATGTCTTGGGGGAATGGCCAGCGGGCCCTGTGG
GGAGCAGTTCAAGTCTGCCTTCTCCTGCTTCCACTACAGCACAGAGGATATCAAGGGATCAGACTGTATA
GACCAGTTCCGGGCCATGCAAGAGTGCATGCAGAAGTACCCGGACCTCTATCCCCAAGACGAGGAGGAGG
AAGAGGAGGCAAAGCCAGTGGAGCCGGTGGAGGAGACAGCTGACACTAAGGTCTCTGCAGCCAAAGAGCA
GGGGACAAGCTCTTGAAGGCCACATGGCTGCCACTCACCATGGGACTTTCTGTACAATGCCTTTTGGTCA
CCTTTGTGAAAGTTCTTTCCCTCTGTGCACTGTAATATACAAAATAACTTATTTTAATGATCAGGGGTCT
TGGCCGTATACACTGAAGAAAAGGGCGTGTGTGCACCTGTGTCCTGCATAAACCTGTCCTTAAACATTAG
TCCACTCCTGGATGTACTACTCTGTGATTGCCCTGGATTTTGCCACTTTGAAATAATGTGTTGAGACTTC
TCAGCAACCAAAAGTTGTTACTCAGGAAAGTTTATCGTGAGAAAGCTGACCTATTCTGATCCATTTTGGT
ATCCCTTTTGGTAGATTTTACACCTCTTTTGGAAATTAAGTAAATAGATGCCAAAACTCCTTTAAGAGTG
GGTCCATTCCTACTGGAAGAGGCTGGTGGTCAGGTGCTTGCTGGAGTACATGGGGCTGCTGCCTCGTTCC
CGACAGCTAATTGTCTGTTTGCTGTCCAGGCTCCAGTGCCTACAGCTGCAGGGTGGCATTGGATCCTGTG
ACTCCCGGTCCTTCCTAAGTGAAAGGATGGGCTGGGTTTGCAGTTTATTGTTTTGCTGTTCTAAGAGCCC
TGGTTTGGGGCCCATGTTCACTCAGTTGTGATATTGAGGTGGGGACCTAGCTGCTTCCAGAGCAGAAGCC
AACAGAGGAATGTCTGAATGAAGTACTCAATTAAAAAGAAACAATTTCTATCTGAAAAAAAAAAAAAAAA
A
Notes:The probe template was PCR amplified from IMAGE:5066665 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5066665 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:11045 same embryo
 EMAGE:11047 same embryo
 EMAGE:11043 same embryo
 EMAGE:11046 same embryo
 EMAGE:11044 same embryo
 EurExpress:euxassay_003048 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS