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EMAGE:11309

Trmt12 tRNA methyltranferase 12 homolog (S. cerevisiae) ( MGI:1915510)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:11309 EMAGE:11309 EMAGE:11309 EMAGE:11309 EMAGE:11309
"Pseudo-wholemount" of euxassay_006617. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_006617_01 euxassay_006617_02 euxassay_006617_03 euxassay_006617_04
EMAGE:11309 EMAGE:11309 EMAGE:11309 EMAGE:11309 EMAGE:11309
euxassay_006617_05 euxassay_006617_06 euxassay_006617_07 euxassay_006617_08 euxassay_006617_09
EMAGE:11309 EMAGE:11309 EMAGE:11309 EMAGE:11309 EMAGE:11309
euxassay_006617_10 euxassay_006617_11 euxassay_006617_12 euxassay_006617_13 euxassay_006617_14
EMAGE:11309 EMAGE:11309 EMAGE:11309 EMAGE:11309 EMAGE:11309
euxassay_006617_15 euxassay_006617_16 euxassay_006617_17 euxassay_006617_18 euxassay_006617_19
EMAGE:11309 EMAGE:11309 EMAGE:11309
euxassay_006617_20 euxassay_006617_21 euxassay_006617_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:11309Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
11309_wholemount_strong.wlz
11309_wholemount_moderate.wlz
11309_wholemount_weak.wlz
11309_wholemount_possible.wlz
11309_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:11309_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T7380
Entity Detected:Trmt12, tRNA methyltranferase 12 homolog (S. cerevisiae) ( MGI:1915510)
Sequence:sense strand is shown

>T7380
TGCAGGGAGAGAGCAGCCGGAGAATCTCGCTGATGGACGGCGACGGGGTACAAACACTAGCGACATGGAG
AGAGAGTGTGAGGAGTCTGTAGTTGTCGCAGTTGTGACTGAGCCCCGGTTCACGCAGAGATACCGAGACT
ACCTGGAGGAGCAGAAACTCTTGGACAGGCTGCACCGGGTGGCGAAGCTGCGGGATGGCGCGGTGGCTCT
GCCGGTGCTGGCGGAAAGCCTTTCTGAGCAGCATCTGCAGGAGCTGAGGGATCGCGTGGCCCCAGGCAGC
ACTTGTGTGCTGACGCGGCTCCCGGATCCTCTTCCTTCCAAAAAGGCCCGGGTTCGTTCACCTGCTCAGA
TACTGTGTCTGGAGGTGAGGCGTTGGGTGGAGGACCGCGGAGTGACGTGGTCCGCTGAGTTGGAGGCAGA
TTTGCCCCGGTCTTGGCAACGGCATGGTGACCTAATGCTGCTTAGTGAAGACTGCTTCCAAGCCACGCTG
TGGAAAGGTCTGGAGCCAGAACTCTGGGAGACTGTTGCCTCGGCCCTGGGAGTTCAACGTTTGGCAAAAC
GAGGGCGGGTGCTACCTGATGGGACTCGAACTCCGTCAGTGACTCTGCTGCTGGGTGACCATGGCTGGGT
AGAGCATATGGATAATGGCATCCGGTATAAGTTTGATGTGACACAGTGCATGTTCTCCTTTGGAAACATC
ACCGAGAAACTTCGAGTGGCGTCTCTGTCCTGTGCTGGAGAGGTGCTGGTGGATCTCTACGCAGGGATTG
GTTATTTTACATTGCCCTTCCTAGTTCATGCTGGCGCTGCCTTCGTACATGCCTGTGAATGGAATCCTCA
TGCTGTAGTTGCTTTAAGAAACAACTTGGAGATCAATGGAGTGGCAGACCGGTGCCAAATACATTTTGGG
GACAACAGGAAACTGAAGCTCTCAGACATTGCAGATAGGGTGAACCTCGGGCTCATTCCCAGTTCTAAAG
AAGGCTGGCCCGTTGCCTGCCAAGTGCTTCGGAAGGACGTTGGGGGTATTCTGCATATCCACCAAAATGT
GGAGTCTTTCTCAGGAAAGACTCCACAGCCACCTGGAAGCAATAACGTGGAAAAAGAGCACTGGCCTCGT
CCCCAGAAAATCACCACTGATACACAGGGAAATGGAACTACTGAGAATTTCAGGGGGGAAATATCATCGG
CCAACAAACCAGAGTGGTGGAGATGGGCAGAATCTGCAGAAACTCAGATCGCCTCTCTTCTTCATCAAGT
GCATGGGAAACCATGGAGGACACGAATCTTGCATGTCCACCCAGTGAAATCTTACGCCCCTCACGTGGAT
CACATAGTCCTAGATCTAGAATGCCAGCCCCTGACCTCTAGTTGGCCAGAAGGAGTAGATTTACTGACAC
AGTAATTGCCAGATGAGTGCCTCATCGAGGGCTGTGTTCTCACCCTTCTGTTTTCTGGTGACCTTTTAAA
GTGATCTGTGGTCTGAAAATGAACTCTAGATCGATCCAAAGTTGTCTTCTGTTGATCACATTGAGAATGT
ATTAAAGTATCAGAGGAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:4193356 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4193356 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:11307 same embryo
 EMAGE:11310 same embryo
 EMAGE:11308 same embryo
 EMAGE:11312 same embryo
 EMAGE:11311 same embryo
 EurExpress:euxassay_006617 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS