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EMAGE:11377

Hddc3 HD domain containing 3 ( MGI:1915945)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:11377 EMAGE:11377 EMAGE:11377 EMAGE:11377 EMAGE:11377
"Pseudo-wholemount" of euxassay_006708. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_006708_01 euxassay_006708_02 euxassay_006708_03 euxassay_006708_04
EMAGE:11377 EMAGE:11377 EMAGE:11377 EMAGE:11377 EMAGE:11377
euxassay_006708_05 euxassay_006708_06 euxassay_006708_07 euxassay_006708_08 euxassay_006708_09
EMAGE:11377 EMAGE:11377 EMAGE:11377 EMAGE:11377 EMAGE:11377
euxassay_006708_10 euxassay_006708_11 euxassay_006708_12 euxassay_006708_13 euxassay_006708_14
EMAGE:11377 EMAGE:11377 EMAGE:11377 EMAGE:11377 EMAGE:11377
euxassay_006708_15 euxassay_006708_16 euxassay_006708_17 euxassay_006708_18 euxassay_006708_19
EMAGE:11377 EMAGE:11377 EMAGE:11377 EMAGE:11377 EMAGE:11377
euxassay_006708_20 euxassay_006708_21 euxassay_006708_22 euxassay_006708_23 euxassay_006708_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:11377Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
11377_wholemount_strong.wlz
11377_wholemount_moderate.wlz
11377_wholemount_weak.wlz
11377_wholemount_possible.wlz
11377_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:11377_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Text Annotation:
StructureLevelPatternNotes
lung
strong strong
regionalstrong expression: see section 08 10 16 moderate expression: see section 03 04 05 06 07 09 11 12 13 14 15 17 18 19 20 21 22 23 24
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T8173
Entity Detected:Hddc3, HD domain containing 3 ( MGI:1915945)
Sequence:sense strand is shown

>T8173
GCGCCACCAGCGCAATGGGCTCGGAGGCAGCTCAGCTGCTGGAGGCTGCTGACTTCGCCGCTCACAAACA
CCGACAGCAGCGACGAAAAGATCCTGAAGGGACTCCCTACATTAATCACCCCATCGGTGTAGCCCGGATC
CTAACCCATGAGGCTGGAATCACTGATATTGTGGTGTTACAGGCTGCCCTGCTCCATGACACAGTAGAAG
ACACAGATACTACCCTGGATGAGGTAGAGCTGCACTTTGGAGCACAGGTTCGACGCTTGGTGGAGGAGGT
AACAGATGACAAGACTCTGCCCAAACTGGAAAGAAAGCGGCAACAGGTGGAGCAGGCACCACACAGCAGC
CCAGGGGCCAAACTGGTGAAGCTGGCAGACAAGCTATACAATCTGAGGGACCTGAATCGCTGCACCCCTA
CAGGATGGTCAGAACACCGAGTCCAGGAGTACTTCGAGTGGGCAGCCCAGGTGGTAAAAGGGCTTCAAGG
GACAAACCAGCAACTGGAAGAGGCACTAAAGCAGCTGTTCGAGGAGCGAGGGCTGACGCTCTGAGCCGTT
CTCTGTGCCATCCTGCAGCATGGCTCCAGCAAGGTCCAGGAAAGATGGGATTCTTACTGCAGCGTTCCAG
AGCCTCCTCATTTCCCACATTCCATCACTCAACCCTGACATCACAGGCTAAAAACGTCTGTGTTTTTTCA
CTAAGGTGGGCCCGGAATATGGAAAGCAGATATGCCCCTCCATCCAGGCACTAACAGCCTTTCTTTAAGT
CTTGGGTCTGTTTGCATGGTGAGACCTCTGGCCCCTCAGGGACCTAAGATTGGAATAAGCGTCCGTGGTT
TAGTCGTGGAAAATAAAGCACTTAGGTAAAGGCAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:5119020 using vector (pT7T3D-PacI) specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5119020 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:11378 same embryo
 EMAGE:11376 same embryo
 EMAGE:11375 same embryo
 EMAGE:11379 same embryo
 EurExpress:euxassay_006708 same experiment
 MGI:4825345 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS