EMAGE mouse gene expression spatial database

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EMAGE:11408

Zfp334 zinc finger protein 334 ( MGI:2388656)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_003557. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_003557_01	euxassay_003557_02	euxassay_003557_03	euxassay_003557_04

euxassay_003557_05	euxassay_003557_06	euxassay_003557_07	euxassay_003557_08	euxassay_003557_09

euxassay_003557_10	euxassay_003557_11	euxassay_003557_12	euxassay_003557_13	euxassay_003557_14

euxassay_003557_15	euxassay_003557_16	euxassay_003557_17	euxassay_003557_18	euxassay_003557_19

euxassay_003557_20	euxassay_003557_21	euxassay_003557_22	euxassay_003557_23

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

11408_wholemount_strong.wlz

11408_wholemount_moderate.wlz

11408_wholemount_weak.wlz

11408_wholemount_possible.wlz

11408_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:11408_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T6257
Entity Detected:	Zfp334, zinc finger protein 334 ( MGI:2388656)
Sequence:	sense strand is shown >T6257 GCTCTTCCAGGCGAGGCTCGAGGGGCCTCTGTGCGCCACAATTGCCTGGGGCCTTCTGGGAGCTACAAAA GAAGCGAGGTTTCCCCTGAGCCAGAGGAATTCCGGGTGGCGACTCCGGGGCAGGATCAGAAGAACCAGCG CCTTCCTGGGGCCCGCGGAGGCTTGCGCGTGTCCAGGGGCCGGGCGAGGCTAGCGGGCGCCCCCGGGGCT GCAGGCCTCCGGGCGGGCAGCCTGGGAAGGAGAGAGGTGTGTGCGTGCAAAAAGCGGATCCCAGCAGTCC TGCGGATGCCCTTGGCCCGCCCTTGGATCATCGGTGGGTCCTGGCCCTTTCTTGAGAACGCCTGGAAATG GACAGTACCCAGAGATCAATCTCCTTCAAGGACTTGGCTGTGGACTTCACCCGTGAGGAGTGGCAACGTC TGGGCCCTGCACAGCGTCTCCTCTACAGGGATGTGATGCTGGAGACCTACAGTAACCTCATCGCGGTGGG GCTTCATGTGAGCAAACCAGATGTGATCTTAAAACTGGAGCAAGGAAAAGAGCCCTGGGTAGTGGAAAAC TCGTCACGACAGAACCACGCAGAAGATGATGAGCCCTTAGAGAAGGACAAGAAAACACAAGACAAACATT TGAAGCAGTTATCAGTCGTCAATAGCAAACCAATGCTGGAAAAGGCCAATCTGTCTGAGAAAACAGTTCC TCTCAACACGAATAGTGTTTCTTCGGGAAAAACACTCTATAAATATGACCCTGGCGGAAATGGCTTAGAA AATAACTCAGAAGAAACCATTGCAAAGCCAAGCAAAGCCAATGGGAAAGTAGCTGCTGATCAGGATGGGC GAGGAAAGCCAGCTCTGCACACCAAGGCTGACAGAAGTCACTCTGCAGCAAAACGGTACAGACGTAATGA AGTTAGGGATGTCAAGGGTCAAGGTGAGGGTCTCACTCAACAACAGAATACGCAGTCTGCAAGTCAGCCC TCCGAGCATCGTGAAGGTGAACAGGAGTCAGCCGGCGCAGCGATGTCGGAGGAGCAGCCTGAGCGGAAGC GGAATGAATGCGCCGAGTGTAGGAAGACCTTTTCAAAGAGGTCCACTCTCATTGTCCACCTGAGAATCCA TACCGGAGAAAGACCCTACGCCTGCAATTACTGTAGGAAAACTTTCCGTATAAAGGCAAGCCTCACTCGA CACCAGCGGATTCACACCGGAGAGAGGCCTTACAAGTGCAAGGAGTGTGGCAAAGCCTTCATCGACAAGT CTGCCCTCATCGTGCATCAGAGGATTCACGGAGGGGAGAAGTCCTACGAGTGTAACGAGTGTGGCAAGAC CTTCTTCCGGAAGTCAGCCCTGGCTGAGCACTTCCGGTCCCACACCGGGGAGAAGCCTTACAAATGCAAG GAGTGTGGCAACGCCTTTGGCAAGAAGTCGTACCTCATCGTGCACCAAAGAACTCACCGGGGCGAGAAGC CCAACGAGTGTAAGGAGTGTGGGAAGACCTTCTTCTGTCTGTCCGCCCTGACAGCACACCAGAGGATCCA CACGGGGGAGAAGCCCTACGAGTGCAAGGAGTGTGATAAGACCTTCTTCTGTCAGTCGGCCCTCAACGTG CATCTGAGAAGTCACACCGGCGAGAAGCCCTACAAGTGCCGCCTGTGTGGGAAGTATCTGTGCACCAAGT CTGCCCTGGTGGCGCATCAGGTCATTCACAGAGGGAAGAAGACCTTCGAGTGTCCCGAGTGTGGGAAGCT TTTCTACCTGAAGTCCACGCTCACCATCCATCAGAGAACCCACACAGGAGAGAAGCATGGCTCGCTTAGT AAGTGGAGCCGAGCGTCCGCCGCGAAGCCCAACTGCGGCGAGCAGAAGAGGGCGGACGCCAAGGACACCG TGCACGAGTGTCACGACCACAAGCGGCCAGCCCACAAGAGCTCCCGCCGCTTCGCGCACAAGAGAACCAT ATGGGAGAGGCCTTACGAGTGTGAGGAGTGTGGGCGGACCTACTGCAGGAAGTCAGCTCTCAGGCACCAC CAGAAGATGCACACGGGCGAGCGGCCCTACGAGTGCAAGGAGTGTGGGAAGACCTTCTGCCAAAAGGTCT CCTTCACGGAGCACCAGCGGACTCACACCGGCGAGAAGCCGCACAAGTGCAAGGAGTGTGGGAAGTCCTT CCGCCACAAGTCGGCCTTCACCGTGCACAAGAGGATCCACACCGGGGAGAAACCGTACGCCTGCAACGAA TGTGGCAAGAGCTACCGCCGCCTCTGGACGCTGACTGAACACCAGAAAATACACACGGGCGAGAAACCCT ACGAATGTAACCTGTGTAAGAAATCATTTCGCCACAAATCAAACTTCCTCTTACATCAGAAAACTCACAA GAAGTAAATTCCAGCAGGGTAACAGATAATTTACGAGGTGCCCAAATCCTGAATTACACATAAAGGTGTA AGGCCTTGTCAGCACGGGGACTACTGACGAGTTTCTGCCGGAGTCAGAGGGCTTACACGGGCGACGTCCA ACTCTCATTGTTAACTGTGAAGACATTCGGCATTTCAGACATTACACCAGGTGTGCCTGCCTCCCTTTCA AACCACGGAACAAACACTAAGTCCTACCTGCTCTCCCTCCAGTTAATTTGCATAGCGTATGATGTGGGCG TGAGGCCAGTGTTGATTCCAGATCATTACCAGTTGTTCCTGGGATAACTGGGCAGTGTCTGTTTATGAGT TTACAGTATTAACAGCTCAGACTACATAGCCTGTTTGTCCCCTGTCGCTGCTGTCTAGTGACAGGCCCTA ATCCCTTCATCTGCAAAGGTGAGTCAGCCGAGCCACCCTTCACTTCCCTACCTGTAGCGACTCCCACACA GCAGTAAGCTTTTGCTAAAGCCGAGTCATTGGTGTTTTCTAATAAGAGGCACAAGGTGGCTTGTAAGTGC CTCCTTGAGCTTCCATGTAAGCCAAGAAAACAGTGACCACAGTTACCATAGCAAAACCAAAAATGAAGCG AGCAGATTTGAATAGTGAAGAGGATTTGGGGAGTGTTTGAGTCAAAACAGTGTCTGTGTTGTTTGTGTTT TAAATACCTCTGTTGTATTAGTGGTTTGATTATGTCAGTGTTTTCAAAAATATCTTGATTTTTTTTTTAA TGAACATGTCCATAGGGGTATGATTTAGAATTTACCTGTCAGCTTCTGAGAAAACGTCTCCATGGTGCCA AATAGAATCACGTAGTGTGGATATGTGCATCTAGCCAGAATGTCTGCCATTCGTGGTGGGTTAATGTCAG GTCCTGGGAGCCAGCCCTGCTCTCTGATGTGCTGTGCTTTTCCTAGGACAATGAAGTGAGAAGGGCCACT GGGTATCTTGTCATGGGCCTTGCCTGTGGTTAAGCTGGCAAATCAGCCCTTGGCATGGCTGCCGTAAGTT GTGTTGTCCAGCTTAGTTTTGATAATGAGTGTCACTCTGACCTGTCTGCTGCCTCCGCTTGTGGTGTTGG GCTCTTAGGTAAGAAAAGATGCCCCTTGTTTGAGACCCATCAGAAATCCCAGTATGAACAAGATTATCTG TTTATTCAGTTTGTATTTTATATCCTTCAGTAAGGTAAATACATATTTGTGAATGCACATGTATTCGATA TATACTAATATATGCTGAAACAGGAATATATGTATATATCAATAGTAGTCTTTTTCTGAAAATTTTAATA ATTACTTAAAAGATTTGGGTTTGCTGTTGCAAATACAATTTTATCATCTGCTTTTAAAATTACTGATAGA GGCCTGACAAGGATTAGCAAGCAAAGGTGCTTGCTGGCAAGCCTGACAACCCGAGTTCAGACCTTCCGTC TCACGTAATAGAGAGAACTGATTTTCTTACACGCTACCCTGATTTCCACAAGTGTGATATAACATGCACA CACACAACAAATACATACATGCATATATACATACACACATAAATAATAAATAAGATTTAAAGTGTTTTTA AAACTCACTGATCAGATTCTGAAGCATTTTTACCACACTTGTCAAAGTGCATTCCCTATACTTACTTTTC TTCGCTTGGTCTTAGAAATCTCCCAGCTCCTTGTAGAGGATGTTGGTGAGCTGTCTTGTGGAGGTAGTTT TTGCTCTTTGAAGATCTGTACCTAGCTGTCTAATTGTGCCTTCTGCTTGCCGCTTATGAAACAAATCACA ATCTTGTGATTATGGAATTGTTTCCCAATATTGGTTTGACCAAGGAAGAGAGTTTTTTCAAGTCTGGTGA GAAATATTTAAGTCCATAAATGGAAGGTCAGAGAGCCCCAATCACAGAAAGTCACAAGACACATCAGAGT GACACTTGAGGGTCCAGTGAGAGGACTCCGCTTGTTCTGCAAGCCAGCAACCCGGGACACCTATAAATGT GGACAGCGAGACCCGGCTCCGCAGGACTGTCCTCTGACTGTACGTGGGCTGCCGTCCCAAGCACACAGAC AACAGTGCAGTTTTTAAAGTTGTTTTAAAAAGAAATAACTTGAAGACACGTAAAAAATCTAAAGCAACTA AATGGAAGAGAATCCTTAAAAGCAGCTGAAGGGAATGCAAATGTAGGTCTGTGGACTTCCTACAGCTGCC GCAAGAACCCATCACACTGATCAGAAGAGTGTGACGGTTCTCAGCTCACCTGTCCGGCCCAGTGCTGCGA GCCTGCTCCCTTCTGACCGCTGGAGGCCGGCTGGGCTTCTCCCGTGTGGTCTTCCTACAGCTTGTGGCAA CGCAACTTCAGGTTTTGCATCTGTCCTCACTACGCCTGTTCCTCCTCACTGCACATGTCTGTCGTCTCTG CGGATGTCTGTCTACGTTTCCATTTTATCAGGACATGTCTGATCAAGGTCCCACCTTACTCACATGTGAC CTCATGTTGATTGGCATCTGTAAAAGCCTTATTCCGTAAGGTCACATTGAAAGTATTAGAGGCTGGAGGG ACATTATTGGTACCCTAAGACGTACCCCATGTTTACCAGATTAAAATGACGGTAGATAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAA
Notes:	The probe template was PCR amplified from IMAGE:3501307 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3501307 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:11412 same embryo
	EMAGE:11409 same embryo
	EMAGE:11410 same embryo
	EMAGE:11413 same embryo
	EMAGE:11411 same embryo
	EurExpress:euxassay_003557 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source