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EMAGE:11409

Ccdc106 coiled-coil domain containing 106 ( MGI:2385900)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:11409 EMAGE:11409 EMAGE:11409 EMAGE:11409 EMAGE:11409
"Pseudo-wholemount" of euxassay_003529. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_003529_01 euxassay_003529_02 euxassay_003529_03 euxassay_003529_04
EMAGE:11409 EMAGE:11409 EMAGE:11409 EMAGE:11409 EMAGE:11409
euxassay_003529_05 euxassay_003529_06 euxassay_003529_07 euxassay_003529_08 euxassay_003529_09
EMAGE:11409 EMAGE:11409 EMAGE:11409 EMAGE:11409 EMAGE:11409
euxassay_003529_10 euxassay_003529_11 euxassay_003529_12 euxassay_003529_13 euxassay_003529_14
EMAGE:11409 EMAGE:11409 EMAGE:11409 EMAGE:11409 EMAGE:11409
euxassay_003529_15 euxassay_003529_16 euxassay_003529_17 euxassay_003529_18 euxassay_003529_19
EMAGE:11409 EMAGE:11409 EMAGE:11409 EMAGE:11409 EMAGE:11409
euxassay_003529_20 euxassay_003529_21 euxassay_003529_22 euxassay_003529_23 euxassay_003529_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:11409Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
11409_wholemount_strong.wlz
11409_wholemount_moderate.wlz
11409_wholemount_weak.wlz
11409_wholemount_possible.wlz
11409_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:11409_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6264
Entity Detected:Ccdc106, coiled-coil domain containing 106 ( MGI:2385900)
Sequence:sense strand is shown

>T6264
GTGCGGGAGGAATGGGCGGCTGGGACAGGGGAACGCTTGCAGGATGGACCCCCTACCCCAAGAATGGAAG
TTAGGGGTGGTTGTTTCTCCATTTATGGCATTGGGTTCGGAGATGGGCCATGATGAAGGGCTTTCTCATT
CAGGCCAGGTCTCCCTGTGGTGTTGACCCCACGAGGAACCAAAGAATTTAAGGGCCGAGCCCCTTCACAA
CCAAGATTCCTCTCGCTGAGCCCCCTCGCTCTGGGTACATACTTTGGAAGCCTCTGACTCTGTCCAGAAG
TATGGGTCCTTTCCTCCCTCAGACTGGTGATCCTTCCTTACTCCGGAGGGACAGGTATTCCACCTCTCCA
GGGACTGCCGACTTTTGGTGACCTGCTTCTGTCCAGTGCCCCCAAGGGCTCAGTTGCTGGGTCTGCAAGG
AAGCCTCCTCGATATGAATGACAGAAACAACCGTTGGCGGACAATGAAGGACGAAGAGACCTTTGAGATC
TCCATTCCTTTTGAAGAGGCACCCCACTTAGACTCACAAATCTTATACCGTCTGAGTCCGTCTCGGAGAA
ATGTTGAGGAGCCTCCAGAGGGCGCCTCCCCAACCCTGGCCCTGATGAGCAGTGTTAAGGCCCAGCTGCA
CATGGCACTGGAGAGGAACTCGTGGTTGCAGAAGCGCATTGAGGACCTGGAGGAGGAGAGGGACTTCTTG
CGGTGTCAGCTGGACAAATTCATTTCCTCTGCCCGGATGGATGCAGAGGACTACTGCCGGATGAAGCCTG
GACCTCGGAGGGTTGATGGGGACAGCAGGGCTGGGGTTGGAGAAGCCTCAGACCCCGAGTCGGCAGCCTC
CTCCTTCAGCGGGGTTTCCGAAGACGGAAGTGCCAGTGAAAGGAAGAGGCAGAAGCAGAAGGGAAGTACT
GGCCGGAAGCGATTTGGGAAGACCAAGGCTCGAGAGAGGCAGCGGGTGAAGGATGCTGATGGGGTCCTCT
GCCGCTACAAGAAGATCCTGGGCACCTTCCAGAAGCTGAAGAGCATGTCCAGAGCCTTCGAGCACCACCG
TGTGGACAGGAACACCGTGGCGCTGACCACGCCCATCGCAGAGCTACTCATTGTGGCTCCCGAAAAGCTG
GCTGAGGTGGGAGAGTTCGATCCATCCAAGGAGCGCCTGCTAGAGTATTCCCGCCGCTGCTTCCTGGCAC
TGGACGACGAGACTCTCAAGAAGGTGCAGGCTCTCAAGAAGAGCAAGCTGCTCCTGCCCATCACCTACCG
CTTCAAGCGGTGATGCCGCCGCCCCGCACGCCTCCCCCCCAGCAGATTGCTGGCTAGGTCGGCCTTCCCG
GGGCACCGCCAGGGCTAGAAGCTGCCCTTCCTGAGCACTGGGCCCTGCTTCTCGGCCGCACACGCTAGGC
ACCCCGTCTCCATTTCACCCCGCAGGGGCTGCCAGCTAGGCCTCCTTAGCCAGGAGTAGCCCATCTGCAT
CCCATGCAAAGATAGAGTATTATTCTGAGAGTTTAAATTAAAGAGACATGAAAATTTTCAATAAAAAAAA
AAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3501538 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3501538 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:11412 same embryo
 EMAGE:11410 same embryo
 EMAGE:11413 same embryo
 EMAGE:11411 same embryo
 EMAGE:11408 same embryo
 EurExpress:euxassay_003529 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS