EMAGE mouse gene expression spatial database

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EMAGE:11457

Ppdpf pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)RIKEN cDNA 2700038C09 gene ( MGI:1913746)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_006834. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_006834_01	euxassay_006834_02	euxassay_006834_03	euxassay_006834_04

euxassay_006834_05	euxassay_006834_06	euxassay_006834_07	euxassay_006834_08	euxassay_006834_09

euxassay_006834_10	euxassay_006834_11	euxassay_006834_12	euxassay_006834_13	euxassay_006834_14

euxassay_006834_15	euxassay_006834_16	euxassay_006834_17	euxassay_006834_18	euxassay_006834_19

euxassay_006834_20	euxassay_006834_21	euxassay_006834_22	euxassay_006834_23	euxassay_006834_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

11457_wholemount_strong.wlz

11457_wholemount_moderate.wlz

11457_wholemount_weak.wlz

11457_wholemount_possible.wlz

11457_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:11457_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T9116
Entity Detected:	Ppdpf, pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)RIKEN cDNA 2700038C09 gene ( MGI:1913746)
Sequence:	sense strand is shown >T9116 GGTGCAGGAAAGCTACTAAGTACGCGCGTGCGCATAGCGCGCGTGGGTCCTAAAGTGGTGTTTCGTGGGT TATCTTTGCAAATGGGCTCCGCGGCCTAGCGCCCTGGTGGCCTAAAAACGAAGCCTGCAAGGAAGGGGTT CTCCGCCGAGCCGGACCGGGCTGGTTGGAGCCGCTTGGAAACCTGGCACTGTCAGGACCCGGGAGACTCG GGGAACCCTCCGGTGTGCGGTGACCAGGGCCCACATTCTGCTCTCGTCTCCGCAGCGCCTCGGTCCTGAA GCATGGCAGCCATCCCTTCCAGCGGCTCGCTCGTGGCTACCCATGACTACTATCGGCGACGCCTGGGCTC CTCGTCCAGCAGCAGCTCCGGCGGAAGTGCCGAGTACCCTGGGGACGCCGTGCTCCAGTCCCCGGGTCTT CCCAAAGCCGACCCGGGCCACTGGTGGGCCAGCTTCTTTTTCGGGAAATCCACACTCCCGTTCATGACTA CAGTGTTGGAGTCTCCTGAGCGCTCGGCAGAATCCCCCCAGGTCTCCAGAAGCCCGATGACCTGTGGCCT GACTCCTGAAACCATGAAGCAGCAGCCAGTCATCCATTCTGGCCAGACCAACCCCAGGGACCTTTCCTGA CCTATCAGAATCTGCAGCCTGCCCAAGCTGAAGTGGTGCTAGGCCAGTGCCTACCCTCTCGACCCTCCCT GTAAACTAGGAAGGCTGAACAAGAGAAACCAGTAGAAGCTGGAGAGAGCCCCCTCTTGGTTCACAGCACT GAACTTTCCTGACCCCATAACTGTGTCTTGGCACAAAGCAGAAAATAAACTCACAGCAGCCAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:6824261 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6824261 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:11454 same embryo
	EMAGE:11456 same embryo
	EMAGE:11458 same embryo
	EMAGE:11453 same embryo
	EMAGE:11455 same embryo
	EurExpress:euxassay_006834 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source