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EMAGE:11491

Afmid arylformamidase ( MGI:2448704)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:11491 EMAGE:11491 EMAGE:11491 EMAGE:11491 EMAGE:11491
"Pseudo-wholemount" of euxassay_006934. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_006934_01 euxassay_006934_02 euxassay_006934_03 euxassay_006934_04
EMAGE:11491 EMAGE:11491 EMAGE:11491 EMAGE:11491 EMAGE:11491
euxassay_006934_05 euxassay_006934_06 euxassay_006934_07 euxassay_006934_08 euxassay_006934_09
EMAGE:11491 EMAGE:11491 EMAGE:11491 EMAGE:11491 EMAGE:11491
euxassay_006934_10 euxassay_006934_11 euxassay_006934_12 euxassay_006934_13 euxassay_006934_14
EMAGE:11491 EMAGE:11491 EMAGE:11491 EMAGE:11491 EMAGE:11491
euxassay_006934_15 euxassay_006934_16 euxassay_006934_17 euxassay_006934_18 euxassay_006934_19
EMAGE:11491 EMAGE:11491 EMAGE:11491 EMAGE:11491 EMAGE:11491
euxassay_006934_20 euxassay_006934_21 euxassay_006934_22 euxassay_006934_23 euxassay_006934_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:11491Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
11491_wholemount_strong.wlz
11491_wholemount_moderate.wlz
11491_wholemount_weak.wlz
11491_wholemount_possible.wlz
11491_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:11491_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T9944
Entity Detected:Afmid, arylformamidase ( MGI:2448704)
Sequence:sense strand is shown

>T9944
GGATCTGGCCATGGCGTTTCCTTCCCTTTCTGCGGGCCAGAATCCCTGGAGGAACTTGTCTTCGGAGGAG
CTGGAGAAGCAATACTCACCCAGCAGATGGGTCATCCACACGAAACCAGAGGAAGTTGTTGGGAACTTCG
TGCAGATAGGAAGCCAGGCCACCCAGAAGGCCCGGGCCACCAGGAGGAACCAGCTGGATGTCCCCTATGG
AGATGGCGAAGGGGAGAAACTGGACATCTACTTTCCCGATGAGGATTCCAAGGCTTTCCCTCTGTTCCTG
TTCTTGCATGGAGGATACTGGCAGAGTGGAAGTAAAGATGACTCGGCCTTCATGGTAAACCCACTGACTG
CACAGGGAATCGTGGTGGTGATAGTGGCTTATGACATTGCACCCAAAGGCACACTGGACCAGATGGTGGA
CCAGGTGACCCGCAGTGTCGTGTTTCTACAGAGGCGCTATCCAAGCAATGAGGGAATCTACCTCTGCGGA
CACTCTGCGGGAGCTCACCTGGCTGCTATGGTGCTCCTGGCCCGCTGGACCAAGCATGGCGTCACACCCA
ACCTCCAAGGCTTTCTCCTGGTGAGTGGGATCTACGACCTGGAGCCCCTCATAGCCACCTCCCAGAATGA
CCCTCTGCGCATGACCCTGGAAGATGCTCAGAGAAACAGTCCACAGCGACACTTGGATGTGGTTCCAGCA
CAGCCTGTGGCTCCAGCCTGCCCTGTGCTGGTGCTTGTGGGTCAGCATGACTCCCCAGAGTTCCACCGGC
AGTCCAAGGAGTTCTACGAGACACTTCTCCGCGTGGGATGGAAGGCCTCTTTCCAGCAGCTGCGTGGTGT
GGATCACTTTGACATCATAGAGAATCTGACCCGGGAGGATGACGTGCTCACCCAGATCATTTTGAAAACA
GTCTTCCAGAAGCTGTGAGGACACCCAGTCCCCATTCTGTATGCACCTCAGAGAGCCTTCAGAAAAGAGG
CTCCATCTCACACTGCCTTGCCTGTCCACCCTGTACAGTCTCCCTGCTGTGAACACAATCTCCTCTCCTG
CCATTCTTCACCCCACCCATATGGAGGCCCAGGGAAAGCCTGCAGATTGTTACTGGAAAATGCACACAGC
CACCACCTGGCCAAGTCTGCCCCACCCTCCACCCCACCCCTGCCTGCTGACAGGGAGTTGCCATTAACTT
CTGGCTGGCTTTCTGTGCCAATTAGCAGTATCAGTGTGGACTGGCTGGGGCTGAGGCTGTAGCTGAGTGC
TGGAGTTCTGCCTATCTCCTACTGCAAGAGAAGGTGGGGTGGGGAAAAGAAATGAAGACAGACAGACAGA
CCAACCAAACACTGGGGGACGTAGCTCGCTGGTAGAAAGCCTGACCACCATGCATACGATCCTGGGTTTC
AACAAGGAAACCTGATACTAACAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:30301832 using vector (pDNR-LIB) specific primers. Forward Primer - name:M13 forward (-21), sequence:TGTAAAACGACGGCCAGT; Reverse Primer - name:T3-pDNR-LIB rv, sequence:CAAATTAACCCTCACTAAAGGGTGTTCACTTACCTACTGGGC. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30301832 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:11492 same embryo
 EMAGE:11494 same embryo
 EMAGE:11490 same embryo
 EMAGE:11495 same embryo
 EMAGE:11493 same embryo
 EurExpress:euxassay_006934 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS