Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:11975

Fam167a family with sequence similarity 167, member A ( MGI:3606565)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:11975 EMAGE:11975 EMAGE:11975 EMAGE:11975 EMAGE:11975
"Pseudo-wholemount" of euxassay_010984. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_010984_01 euxassay_010984_02 euxassay_010984_03 euxassay_010984_04
EMAGE:11975 EMAGE:11975 EMAGE:11975 EMAGE:11975 EMAGE:11975
euxassay_010984_05 euxassay_010984_06 euxassay_010984_07 euxassay_010984_08 euxassay_010984_09
EMAGE:11975 EMAGE:11975 EMAGE:11975 EMAGE:11975 EMAGE:11975
euxassay_010984_10 euxassay_010984_11 euxassay_010984_12 euxassay_010984_13 euxassay_010984_14
EMAGE:11975 EMAGE:11975 EMAGE:11975 EMAGE:11975 EMAGE:11975
euxassay_010984_15 euxassay_010984_16 euxassay_010984_17 euxassay_010984_18 euxassay_010984_19
EMAGE:11975 EMAGE:11975 EMAGE:11975 EMAGE:11975
euxassay_010984_20 euxassay_010984_21 euxassay_010984_22 euxassay_010984_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:11975Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
11975_wholemount_strong.wlz
11975_wholemount_moderate.wlz
11975_wholemount_weak.wlz
11975_wholemount_possible.wlz
11975_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:11975_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Text Annotation:
StructureLevelPatternNotes
medulla oblongata part of 4th ventricle choroid plexus
strong strong
regionalstrong expression: see section 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21
rib
moderate moderate
regionalmoderate expression: see section 03 04 05 06 07 22 23 weak expression: see section 08 09 20 21
forearm mesenchyme
moderate moderate
regionalmoderate expression: see section 03
radius
moderate moderate
regionalmoderate expression: see section 01 02
ulna
moderate moderate
regionalmoderate expression: see section 01 02
humerus
moderate moderate
regionalmoderate expression: see section 02 04 05 06 22 23
hand
moderate moderate
regionalmoderate expression: see section 05 06
fibula
moderate moderate
regionalmoderate expression: see section 02 03
tibia
moderate moderate
regionalmoderate expression: see section 01 02
femur
moderate moderate
regionalmoderate expression: see section 02
thyroid gland
weak weak
regionalweak expression: see section 16 17
vibrissa
moderate moderate
regionalmoderate expression: see section 06 07 08 09 23
diencephalon lateral wall ventricular layer
strong strong
regionalstrong expression: see section 11 12 13 14 15 16 17
choroid invagination
strong strong
regionalstrong expression: see section 06 07 08 09 10 11 15 16 17 18 19
telencephalon ventricular layer
strong strong
regionalstrong expression: see section 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23 moderate expression: see section 01
medulla oblongata floor plate
strong strong
regionalstrong expression: see section 11 12
metencephalon floor plate
strong strong
regionalstrong expression: see section 11 12
rest of cerebellum ventricular layer
strong strong
regionalstrong expression: see section 22 moderate expression: see section 03
pons ventricular layer
strong strong
regionalstrong expression: see section 22 moderate expression: see section 03
metencephalon part of 4th ventricle choroid plexus
strong strong
regionalstrong expression: see section 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21
midbrain ventricular layer
strong strong
regionalstrong expression: see section 07 08 09 10 11 12 13 14 15
spinal cord floor plate
strong strong
regionalstrong expression: see section 13 14 15
brachial plexus
moderate moderate
regionalmoderate expression: see section 07 08 09 10 11 12 17 18 19 20
nasal cavity olfactory epithelium
weak weak
regionalweak expression: see section 09 10 12 13 16 17 18 19 20
nasal cavity respiratory epithelium
weak weak
regionalweak expression: see section 14 15
heart valve
strong strong
regionalstrong expression: see section 11 14 15 16 moderate expression: see section 12
tongue epithelium
strong strong
regionalstrong expression: see section 11 12 13 14 15 16 17 18 19
tongue muscle
weak weak
regionalweak expression: see section 12 13 14 15 16 17 18
mandible
strong strong
regionalstrong expression: see section 07 moderate expression: see section 04 05 06 08 09 11 12 18 19 20 22 23 weak expression: see section 10 21
lower jaw incisor
strong strong
regionalstrong expression: see section 13 14 17 18
lower jaw molar
strong strong
regionalstrong expression: see section 08 09 20 21
maxilla
moderate moderate
regionalmoderate expression: see section 04 05 06 08 09 11 12 18 19 22 weak expression: see section 10 20 21
upper jaw incisor
strong strong
regionalstrong expression: see section 13 14 17 18
upper jaw molar
strong strong
regionalstrong expression: see section 08 20 21
metanephros
strong strong
regionalstrong expression: see section 07 08 09 10 11 18 19 20 21 22
trachea cartilaginous ring
strong strong
regionalstrong expression: see section 14 15 16
clavicle
moderate moderate
regionalmoderate expression: see section 10 18 19 weak expression: see section 08 09
sternum
moderate moderate
regionalmoderate expression: see section 12 16 17
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T9339
Entity Detected:Fam167a, family with sequence similarity 167, member A ( MGI:3606565)
Sequence:sense strand is shown

>T9339
CAACCGCCCTGACGCAACGCAAAAGAACGTCCCTTCAAAAAAGAACGGTGCGGAGAATTCGCACCGCTAC
GGAGCCCGGGAGCTCGGGAGGCGGGAGCCGAGCTCCGAGGGAGGGCGGGCGCGGGCTGGCGGCGGGGACC
GCGACAGCTCCGAGGACGCGCGACTGGAGCTCAAGAAGGTATACAGCTAGAAACATTGGATCCCAAAGAT
TTCCTGCTGATGCTTGTCTGATCCTGCCTTCTGTGAAGCATGGCCGCCACAGGATTACGACAGGACAAAT
CATAGACCCTGAGTCTCACAGCTGCTCTGAGAGGCACACGCTACAGCCTTGCTTGGCGCCAGGTGCTGCC
ACGCCGTGAGACTCACTCCCATCCCAACAATGCCTTCAGGCGCCATGGCTGCAGCCGTATGAGACCATTA
AGGAGCAGGACTTGACCTTGCTACCCAGTAAACCTCCCGAGCGGCCCCCTACCACCTCCCATGTCTGGCT
ACCAGGGCGGACTAGAGAATGTCTGTGCCCCAGATCCAAGTGGAAGAAGTGAGTGAGAAAGACAGGCCAG
CCGGGGCAGCCGTACCTCCTGATGACCACCTCCTCAGTCTGAAGGCCCTCACTGAGAAGCTGAGGCTGGA
GACCCGAAGACCTTCCTACCTGGAATGGCAGGCCAGGCTGGAAGAGCAGACATGGCCTTTCCCAAGGCCA
GCTGCCCAGCAAGAGGCGAGTCTGGAGCAGGGAGCATGTGGGGGTGGAGAGCCTTTGATGCCTCTAAAGG
AGCCCCGAGACCTTCTCCCACCTTCCGCGAGTGCCGGCAGGGGTGACAGGCCACTGACCACGGGCAAGCT
GGAAGGCTTCCAGAGTATCGATGAAGCTATAGCCTGGCTCAGAAAGGAACTGGCAGAGATGCGGCTCCAG
GACCAGCAGCTGGCCAGGCAGCTCATGCGCCTCCGAGGAGACATCAACAAGTTGAAGATCGAGCAGACCT
GCCGCCTGCACCGGAGGATGCTCAACGATGCCGCCTTTGAGCTGGAGGAGCGGGATGAGCTGTCCGACCT
CTTTTGTGACTCCCCGCTGGCATCCTCTTTCAGCCTTTCCATGCCACTCAAGCTCATTGGCGTCACCAAA
ATGAACATCAACTCCAGAAGGTTCTCTCTCTGCTGAGAAGCCTTAGGATGGAAGGGAAACCACAGCCAAG
GGTGAGAGAGAGAAGGCTCAGACCAAGTGGTACTTTGGGTACCAGTTACTCCCCCTGAGGTCTTGGGAGT
AAAAGGCACCAGGACCTGGTGGTAGTATGCCAGGGGCTTCAGCTTTGTATACCTGGGTCTTCATGTTCAA
GACCCAAAGAGTCTGCAGACATTATGTAAGGCAGGGCTCTCAGCAGGATCCCTGTGGCCTTCCCCTCTAT
GGCCCACTTTCCTGTGACCTAGAATCACTGGTGCTATGATGTTGAATCCCAAAGGGGACACCCCTCCCAT
ACCCCTGCCAAAGCTTGTTCTTATAGAAAGCTCTACTCTAGGGAAGCTGAGAAGATTAGATTGTGCCAAG
TATACCCATCTCTCACGTATTGTTACCACCCTCTTAGTGCTAGCTCTAATTGCCCCTATGTAGGAGGCTC
AGCAACCTGTGCAGGGATGTGGTAGGACAGGAAAACTTAAAGGAATAACAAGATGACAAGTGGGAATGCA
GGCTCCTCTTCAATGGCTACCAGCATCCCAGAGAAGGAGCTCTGCCCAGGTACTTTGAACTTCAGCCTTG
ATGCCACAAGGCCATGCTGTTTCTAGCTTGATCCATGGCATATGATATATGACATATGTACCTTGTATAG
CTTTGGTAGAGCAACCCAGGTATCCTGCTGTCTCCCATTACAACCACTTCAGTTACCTCTCTGCCACCCG
CAACCCCAGGAGAACACCTAGCAGGCTACTGGTCACTGATGGCTAAACTAGGCAAGATAGGAGATAGATT
TCCCACAAGTGAATTCTATAATAGGGAGCATGACAGAGGTCCCCTGGTGGAACCTGATATTGTCACCTTA
TCCTCCGTACCAAAGACCCCAGGGATCCCAAAATTCCATCCTGAGCCTCTCCCAAGACTGTGCCTGATCT
AAGCAATGGATTTCAATTGACCATGACTGTTAACTAATGCGTTGCTAACTTGTTAATACCTGTCTGAATC
CTGTCCAAATGGAAAACCAGTTGAGTAGGCCACACATAGTTTGGGCTTTAGTTTTGAGAGTTTTTCCCTA
GCAGCAAGCTTGAGCTCAGTAAAATGTTAAGCTCTTCAGTTCAGGGAAGACCTGGTACGGCACACCTGGC
CACAATCCTCTTAACACAAGTTCCTCATACTCTGGGTGTGTCTAGTGAGGTCTGCTCGACTCTGGGTGTG
TCTAGTGAGGTCTGCTCATGAGCACAGAAGGGCAGAGTGAAGCCTGGAAAGACAATGACTTCCCTCCAGT
TACCTGGCTGCTCCACAGCTATAGAATATTAAGGTGTGAAATTACTGTGAATCCATCCTAGATCTTCTGC
CAATGAACTTGAACTCCAAAAGATGGTACTGATGCTCTGCCAAACCCACAAGTTGCCAGCTTCTCCCTCC
CTCCCTCCCTCTCGGTCCCTATTCATTCTTCTCTGGCAATGACTAGTACTGGGGTTGGGGAGAGGGGAGC
ATAACTCCCAGATGGCGGACCCTTAGCACTTACCACTTGTCAGGGCTCTGCGGTCTATACTGACTGTTCT
CTGTATATAACATTTCTTCCTACCGATAATCCCCATGAGCTGTGTCCACACACGACACAACACACGCAGA
CTTGAATGGAAAGATAATACTGAATGGCCTCTTCCTTGTGATTTCAAAGAGCCAAACTGTTTTTGTTTCT
TTTTTTAAAGATAGAACAAGGTAGCCAAGATTTTTTTAAGAGCCCTGAAGTCCAGAGGCCTTGACCCCAG
TCCCTTCCTTCAAGACTACACAAAACACTGCCAAGTCCCAAGAGGCCTTTATTTCCCATCACCTCCTGCC
TCTGGTCACCCCCGACCCTTGGGTGACACTCGCCACATCACAGAGAGCACATGAAAGAAGGACCATCCTG
TATTCTAAAAACAATGCCAAACTGAGCGTAAGAAATTAAATCATTATCCAGGCATGGTAGTGCACGTCTT
TAATCCCAGCACTCAGGAGGTGGAGGGAGGAAGATCAGGAGTTCAAGACTAGCCTATGATACCTAGTAAG
TTCTCCAAGTCAGCCTGGGCTTTATGAGACCACACCTCATAAACATAACAGTCACCAGTTATTACAGTAA
CTGACGCTCTTAGCTTAAAGCAAAGCAGAGTGATCGACTTGGATATGGTCAGCAACTAACTATGTGACTG
AGCAGTCTGTGCTCAGATAGGAAAGCACCCAGCATCTTCCTCCTGCTTTTGTTCTCTGGGAAAACTTTGT
CCTAGGCAGGGTTTGAATAGATTAGATGTTTCAACTTAAGTTGTTCATCCCAAGAGAATTGTATTCTGGG
ATAAGGATGGGGGGCTGGGGAGTAGACTGAAAAGGTGGAAGGGAAAGTCATTCTGTCATCTTACCTGTAG
TCTAGTGTCTGTTAGCTCTCTGCCTTCCGTGGTGAGCTCAAACCATTAACTGTTCACTCTGGTGGTAGAA
TCCCCGCAGAGATGTCTGTAGGTCTGTGGCAACATTAGCTGCCTTCCTCAGCCAGCGTCCTGCCTTACTG
TATGTTCACTGTCCTGTTTGGTGTTCCCTCCTTAACCATCTCTATCCCCCCCCCCAGGTGAGACATGAAC
TATCCACTGTGCTGCCACAAGGTCATGTCCAATGCCTCCATGGCCTCAGTAGCAATCACAGAGGCTTAGA
GGGCCTGGACAGGCCTGGCCATAACCTGGCCTCATCTAAGACCTACCCCTGTAGCAATACCAAGTGCTAT
TACATAATCAATTGACAATTTACAGTTTTATTTTTATGATTATTTGTTTCTATATTACTGTTAGAAAAAG
TGAAATAAAAATATTTCAAAAGGAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:6849398 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6849398 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:11976 same embryo
 EMAGE:11979 same embryo
 EMAGE:11978 same embryo
 EMAGE:11977 same embryo
 EurExpress:euxassay_010984 same experiment
 MGI:4824718 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS