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EMAGE:12340

Pef1 penta-EF hand domain containing 1 ( MGI:1915148)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:12340 EMAGE:12340 EMAGE:12340 EMAGE:12340 EMAGE:12340
"Pseudo-wholemount" of euxassay_007124. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_007124_01 euxassay_007124_02 euxassay_007124_03 euxassay_007124_04
EMAGE:12340 EMAGE:12340 EMAGE:12340 EMAGE:12340 EMAGE:12340
euxassay_007124_05 euxassay_007124_06 euxassay_007124_07 euxassay_007124_08 euxassay_007124_09
EMAGE:12340 EMAGE:12340 EMAGE:12340 EMAGE:12340 EMAGE:12340
euxassay_007124_10 euxassay_007124_11 euxassay_007124_12 euxassay_007124_13 euxassay_007124_14
EMAGE:12340 EMAGE:12340 EMAGE:12340 EMAGE:12340 EMAGE:12340
euxassay_007124_15 euxassay_007124_16 euxassay_007124_17 euxassay_007124_18 euxassay_007124_19
EMAGE:12340 EMAGE:12340 EMAGE:12340 EMAGE:12340 EMAGE:12340
euxassay_007124_20 euxassay_007124_21 euxassay_007124_22 euxassay_007124_23 euxassay_007124_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:12340Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
12340_wholemount_strong.wlz
12340_wholemount_moderate.wlz
12340_wholemount_weak.wlz
12340_wholemount_possible.wlz
12340_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:12340_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4692
Entity Detected:Pef1, penta-EF hand domain containing 1 ( MGI:1915148)
Sequence:sense strand is shown

>T4692
CCACGCGTCCGTAACCGCCATGGCCAGCTATCCAAACGGACAGAGTTGCCCAGGAGCTGCAGGACAGGTG
CCTGGAGTACCCCCGGGGGGCTATTATCCTGGTCCTCCCCATGGTGGGGGCCAGTATGGCAGTGGACTGC
CCCCAGGTGGTGGCTATGGAGCTCCTGCCCCTGGAGGACCTTATGGATACCCCAGTGCTGGAGGAGTCCC
CTCGGGAACTCCAAGTGGACCATATGGCGGTATACCTCCAGGGGGTCCCTATGGTCAGCTACCTCCAGGG
GGTCCCTACGGTACCCAGCCTGGACATTATGGACAGGGTGGTGTCCCCCCGAATGTGGATCCTGAGGCCT
ACTCCTGGTTCCAGTCAGTGGATGCCGATCACAGTGGCTATATCTCCCTCAAGGAGCTGAAGCAGGCCCT
AGTCAACTCCAACTGGTCCTCATTCAATGACGAGACATGCCACATGATGATAAACATGTTTGACAAGACC
AAGTCTGGCCGCATTGATGTCGCCGGCTTCTCAGCCTTATGGAAATTCCTCCAGCAGTGGAGGAACCTCT
TTCAGCAGTATGACCGGGACCGCTCGGGCTCCATTAGCTCCACAGAGCTGCAGCAAGCGCTCTCCCAGAT
GGGCTACAACCTGAGCCCTCAGTTCACGCAGCTCCTGGTTTCCCGGTACTGCGCACGCTCTGCTATTCCC
GCCATGCAGCTTGACTGCTTCATCAAGGTGTGTACCCAGCTGCAGGTGTTGACTGAGGCCTTCCGGGAAA
AGGATACCGCTGTACAGGGCAACATCCGGCTCAGCTTTGAGGACTTTGTCACCATGACGGCTTCAAGGAT
GCTATGACCCAGCCTCCCTAAAGGGAGTGGAGCACACCAGGGGATGTGGGCCCCTCCTTTCCTCCTCTCC
TAGCAAAGAGTGTTTCCTAGCCTGAGCTAGGAAGGGCGGAGCTTGACTATCCTGGGCTGTGGAGTGGTCT
TGCCTTGGAGTAGGGGCCCTAGAGTAGCAATGGAGTTAGTGTCTGGCCAGCTGTCCTGGCCTCTGGCTTT
CCCCCTCTACTCCCTGATGCCAGTGCTAAGTGCTCATTGGCTGCCTACCTGTCATCCCTCACCGAGACCA
TCGGGTCAGACGAGCCCAGGTTCTGCACAGTGGAGTCAGACTGAGCTGAGAGAGATTTGCTGGGACCAGA
GCCTGGGGTCCCTCAGCTCCTCAGTCCTTGTATGTTAACATTAATTTTCCTGAGGCTTTGCCTGCACAAG
AAGCTTGGACATTCTGCCATCTCGGCCATATCTGATGAGGCTCATGACCACCAAAACTCGGACCCCTCAC
TGGGCTGCCACGTTCCACCCAGCTTCTCTCCCCAGGAACATTGTCACATCCTACTGCCAACATTGTAATT
TGCTTGTTTGTTTGTTTTTTTTCCCCCATTTGGGGCCAAAAGTCCAGGAAACTGTAAGTGTCAATAAAAG
AAAGACTCTGTAGTCCCATGTTTTCCACCATGAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:5029503 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5029503 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:12342 same embryo
 EMAGE:12338 same embryo
 EMAGE:12341 same embryo
 EMAGE:12339 same embryo
 EMAGE:12337 same embryo
 EurExpress:euxassay_007124 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS