Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:12341

Tgds TDP-glucose 4,6-dehydratase ( MGI:1923605)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:12341 EMAGE:12341 EMAGE:12341 EMAGE:12341 EMAGE:12341
"Pseudo-wholemount" of euxassay_007025. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_007025_01 euxassay_007025_02 euxassay_007025_03 euxassay_007025_04
EMAGE:12341 EMAGE:12341 EMAGE:12341 EMAGE:12341 EMAGE:12341
euxassay_007025_05 euxassay_007025_06 euxassay_007025_07 euxassay_007025_08 euxassay_007025_09
EMAGE:12341 EMAGE:12341 EMAGE:12341 EMAGE:12341 EMAGE:12341
euxassay_007025_10 euxassay_007025_11 euxassay_007025_12 euxassay_007025_13 euxassay_007025_14
EMAGE:12341 EMAGE:12341 EMAGE:12341 EMAGE:12341 EMAGE:12341
euxassay_007025_15 euxassay_007025_16 euxassay_007025_17 euxassay_007025_18 euxassay_007025_19
EMAGE:12341 EMAGE:12341
euxassay_007025_20 euxassay_007025_21

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:12341Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
12341_wholemount_strong.wlz
12341_wholemount_moderate.wlz
12341_wholemount_weak.wlz
12341_wholemount_possible.wlz
12341_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:12341_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4669
Entity Detected:Tgds, TDP-glucose 4,6-dehydratase ( MGI:1923605)
Sequence:sense strand is shown

>T4669
CCACGCGTCCGGATGTCCGCTGCGAGCCGGGAGGAGCGCTCTGGTCCTCCCGGCAGCTTCGCGAAGCGGG
TCCTGGTGACCGGGGGTGCTGGTTTCATTGCGTCCCATGTGATTGTCTCCCTAGTAGAGGATTATCCCGA
CTATATGATCGTAAATCTAGACAAGCTGGATTACTGTGCAAGCTTGAAGAATCTGGAACCAGTCTCTAAC
AAGCAAAACTACAAGTTTATACAGGGTGACATTTGTGATTCTCACTTTGTGAAGTTGCTGTTTGAAGTGG
AGAAAATAGATATAGTACTGCACTTTGCTGCACAGACACACGTAGATCTTTCATTTGTCCGTGCCTTTGA
ATTTACGTACGTCAATGTTTATGGTACTCATGTTTTGGTAAATGCTGCTTATGAAGCCGGAGTGGAGAAA
TTTATTTATGTCAGCACAGATGAAGTTTATGGTGGCAGTCTCGACCAGGAGTTTGATGAATCGTCCCCCA
AACAACCTACAAACCCTTACGCTTCATCCAAGGCAGCTGCTGAATGTTTTGTGCAGTCTTACTGGGAAAG
GTACAAGTTCCCAGTTGTCATCACGAGAAGCAGCAACGTCTATGGACCACATCAGTATCCAGAAAGGGTT
ATTCCAAAGTTCATATCCTTGCTGCAGCACAACAGGAAGTGCTGTATTCATGGATCAGGGCTTCAAAGGA
GAAACTTCCTCTATGCTGCTGATGTGGTGGAAGCCTTCCTCACTGTCCTCACAAAGGGCGAGCCAGGCGA
GATCTACAACATCGGGACCAACTTTGAGATGTCGGTCGTCCAGCTTGCGAAAGAGCTAATACAGCTGATC
AAAGAGACCAATTCAGAGTCTGAAACGGAGAGCTGGGTGGACTATGTTAGTGACAGACCTCACAATGACA
TGAGATATCCAATGAAGTCTGAAAAAATTCACAGTTTAGGATGGAAGCCCAAAGTGCCATGGGAAGAAGG
AATAAAGAAAACAGTTGAGTGGTACCGAAAGAATTTTCACAACTGGAAGAATGCAGAAAAGGCATTAGAG
CCCTTTCCAGTCCAGCCACCATTTATGTAACTGCCATTGCAGAGACGAGGACGTCATCCTACCTCAGCCA
GCAATGTGAATCAAGTGCCTAAAGCAGTGCCATCTTCTCTCCGGGGCTGCGCTCGATGCCCTCAGCACTG
GGTGGGATACAGAGTCTTCAGCAGTTTCAGTATTGATCCAGCATTCACTGTGGAGTTTCCCTTGGCCAAC
TTCTCCTAGAACTCAGGCAGTGGTCCAGCAGGACAGGGCCCTGGCTCTGAGAGCAAAGTCAGGAAGTGGT
ACTTCGTGGATGGCATCCTGGGCTGCTTTGGACTTCTGCCGGCTCCCAGCCTTCCCCAGTACCTGGTGGT
CTCAGATTTTCTGTCCTGCCAATCTTTCCTAGGGTCTGATGATGTGAAAGTTGAACAAAATGGAAGACTA
TCTAGCACTTTTAAACTTTTGATAATTGTATAAAATTAAGTTAAATGGATTTTAAAGGTAAAATGTAAAT
TTCTTACATTTTTTAAATCAGTTGTTGATTTTATATAACCCATATCAGAAATTTTATCATGTATCTACAA
CTTATAATGGTTTTATTTATGAAAGTGTCAATATATTTTAATATATTAAATGCAGATTGTGGCTTTTTTT
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:5012877 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5012877 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:12342 same embryo
 EMAGE:12338 same embryo
 EMAGE:12339 same embryo
 EMAGE:12337 same embryo
 EMAGE:12340 same embryo
 EurExpress:euxassay_007025 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS