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EMAGE:14001

Kdm1b lysine (K)-specific demethylase 1B ( MGI:2145261)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14001 EMAGE:14001 EMAGE:14001 EMAGE:14001 EMAGE:14001
"Pseudo-wholemount" of euxassay_001670. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_001670_01 euxassay_001670_02 euxassay_001670_03 euxassay_001670_04
EMAGE:14001 EMAGE:14001 EMAGE:14001 EMAGE:14001 EMAGE:14001
euxassay_001670_05 euxassay_001670_06 euxassay_001670_07 euxassay_001670_08 euxassay_001670_09
EMAGE:14001 EMAGE:14001 EMAGE:14001 EMAGE:14001 EMAGE:14001
euxassay_001670_10 euxassay_001670_11 euxassay_001670_12 euxassay_001670_13 euxassay_001670_14
EMAGE:14001 EMAGE:14001 EMAGE:14001 EMAGE:14001 EMAGE:14001
euxassay_001670_15 euxassay_001670_16 euxassay_001670_17 euxassay_001670_18 euxassay_001670_19
EMAGE:14001 EMAGE:14001 EMAGE:14001
euxassay_001670_20 euxassay_001670_21 euxassay_001670_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14001Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14001_wholemount_strong.wlz
14001_wholemount_moderate.wlz
14001_wholemount_weak.wlz
14001_wholemount_possible.wlz
14001_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14001_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T1341
Entity Detected:Kdm1b, lysine (K)-specific demethylase 1B ( MGI:2145261)
Sequence:sense strand is shown

>T1341
CGAGCCTGNNTGGCCTACTGGATTTTCAAACTTAGATTCGGGCATATTTTGATATTTTAGACCTGTACAA
CACCCATCAGCAACACAAGACTCAACCTCTTAACAGTGAATACATATGTGTGCAAACATCTCAATGGATA
CAGGATGTTTTCAAACTACAAAACCATTTTTGAGTGGGCAGCACACTTGAAATTTAGCAAAAATCTTGTT
AAACTTGAAAGCCCCTCTTTATTTTTAAAGTTGAATTTTACAGTGTCTAATATTTTACATAGTTGTGAGT
TTCCCATAGGCAGGTCCACTGGAAAACTGCACGAAGTCTCAATCATCTTAGTACATACACAGGACATTAC
TTTATAAGCCATATGTTAAAAGTCTGAACGTGGCAAAACTTACTCTTCCACTGAAAAGACTGTTTAATAA
GCATGGGTTTTCAGGGTCTTTGGGATGCCTATTCTGCCAAGAAACTTCAGTTGATAGACTAGAAATATAC
TTTTGTTTTAAAAAGTCTTTAAACAATTCTTCTTTGAATTATATTGGTCTGCTTTTAAAAGGGAGCTACA
AAGGACT
Notes:The probe template was PCR amplified from IMAGE:2286229 using vector specific primers. Forward Primer - name:T7-pME18S-FL3-fw, sequence:CGTAATACGACTCACTATAGGGCCTTCTGCTCTAAAAGCTGCG; Reverse Primer - name:T3-pME18S-FL3-rv, sequence:CAAATTAACCCTCACTAAAGGGCGACCTGCAGCTCGAGCAC. Anti-sense probe was then transcribed from the PCR amplified template using T3 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:2286229 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:14002 same embryo
 EMAGE:14000 same embryo
 EMAGE:14004 same embryo
 EMAGE:14003 same embryo
 EMAGE:14005 same embryo
 EurExpress:euxassay_001670 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS