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EMAGE:14082

Pgp phosphoglycolate phosphatase ( MGI:1914328)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14082 EMAGE:14082 EMAGE:14082 EMAGE:14082 EMAGE:14082
"Pseudo-wholemount" of euxassay_001721. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_001721_01 euxassay_001721_02 euxassay_001721_03 euxassay_001721_04

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14082Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14082_wholemount_strong.wlz
14082_wholemount_moderate.wlz
14082_wholemount_weak.wlz
14082_wholemount_possible.wlz
14082_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14082_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4090
Entity Detected:Pgp, phosphoglycolate phosphatase ( MGI:1914328)
Sequence:sense strand is shown

>T4090
GGCGGGTGGCGGCGGCGGCAGCGGTCAGCGGTCGACCATGGCAGAGGCGGAAGCCGGTGGCGACGAAGCC
CGCTGCGTGCGGCTGAGCGCCGAGCGGGCCAAGTTGCTGCTGGCCGAGGTGGACACGCTGCTGTTCGACT
GCGATGGCGTGCTGTGGCGCGGCGAGACGGCCGTGCCGGGGGCGCCGGAGACTCTGCGGGCTCTGCGGGC
CCGCGGCAAGCGACTGGGCTTCATCACCAACAACAGCAGCAAGACTCGCACGGCCTACGCGGAGAAGCTA
AGGCGCTTGGGTTTCGGCGGCCCGGTGGGGCCCGAAGCTGGCCTCGAGGTGTTCGGCACGGCCTATTGCA
GCGCGCTCTATCTGCGCCAACGCCTGGCCGGCGTGCCGGACCCCAAGGCCTACGTGCTGGGCAGCCCGGC
CTTAGCAGCCGAGCTGGAGGCCGTGGGTGTCACTAGCGTGGGCGTGGGCCCGGACGTGCTTCACGGCGAT
GGCCCCAGCGACTGGCTAGCCGTGCCGCTCGAACCCGACGTGCGCGCGGTAGTGGTGGGCTTCGACCCAC
ACTTCAGCTACATGAAGCTCACCAAGGCCGTGCGGTACCTGCAGCAGCCCGACTGTCTGCTCGTGGGCAC
CAACATGGACAACCGGCTCCCGCTAGAGAACGGCCGTTTCATTGCGGGTACCGGCTGTCTGGTGCGAGCC
GTGGAGATGGCCGCCCAGCGCCAGGCGGACATCATCGGGAAGCCTAGCCGCTTCATCTTCGACTGCGTGT
CCCAGGAGTATGGTATCAACCCGGAGCGCACCGTCATGGTGGGAGACCGCCTGGACACAGACATCCTCCT
GGGCTCCACCTGTAGCCTGAAGACTATCCTGACCCTCACCGGAGTCTCCAGTCTTGAGGATGTGAAGAGC
AATCAGGAAAGTGACTGCATGTTCAAGAAGAAAATGGTCCCTGACTTCTATGTTGACAGCATTGCCGACC
TCTTGCCTGCCCTTCAAGGTTAAAGATCTAGTGTCTTTAATCTCTGGAATAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:4456284 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4456284 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:14084 same embryo
 EMAGE:14083 same embryo
 EMAGE:14081 same embryo
 EMAGE:14080 same embryo
 EMAGE:14079 same embryo
 EurExpress:euxassay_001721 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS