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EMAGE:14177

Med9 mediator of RNA polymerase II transcription, subunit 9 homolog (yeast) ( MGI:2183151)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14177
euxassay_003958_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14177Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14177_wholemount_moderate.wlz
14177_wholemount_weak.wlz
14177_wholemount_possible.wlz
14177_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14177_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4956
Entity Detected:Med9, mediator of RNA polymerase II transcription, subunit 9 homolog (yeast) ( MGI:2183151)
Sequence:sense strand is shown

>T4956
GCTGGACTCCTGGTGCTATGGCTTCCTCTGGGGTGGCGGGTGGGAGACAGGCCGAAGATACGCTACAGCC
ACCGCCCGAGCTGCTGCCGGAGTCCAAGCCGCCACCACCGCCTCAGCCTCTGCCGGTCGCTGCGCTCCCG
CCGCCGGCGGCTCCGCGGCCTCAGTCCCCCGCTGGCGCGAAGGAGGAGAATTACTCCTTTTTGCCGTTGG
TTCACAATGTCATCAAATGCATGGACAAGGACAGCCCGGATCTCCACCAGGACCTGAACGCCCTCAAAAC
CAAGTTCCAGGAGCTGCGGAAGCTCATCGGCACCATGCCCGGCATCCACGTGAGCCCCGAGCAGCAGCAG
CAGCAGCTCCACAGCCTCCGAGAGCAAGTGAGGACCAAGAACGAGCTGCTGCAGAAGTACAAGAGCCTCT
GCATGTTTGAGATCCCCAAGGACTAGGCCAGCCCCCAGGAGAGCCGCCGCCAGACGGAAAGCATCACGCG
GTGCTCCAGCTCCTTGGGAGCCCCGCTCAAAACTGGGAGGCCACATTCAGCTGGTGTGGGGCCTCAGTGC
TATCTCAGCCCTGACCATGTCCCAGCAGATCTACAGGGCACAGAGGGAGAGGAAATAGCTGTTCCCTTCT
TTCCCTCAGCTCCTCCCACTCCCGATAGCATCAGCATGGTATCAGGTACATACTGTTCCCATTAACAGCA
GTTTCATGAAACATTTGCATAGAATTCACGGGGTAAATTAGGCCTGTACTCAGATGGCATGGATTTATTA
TAATTAAAGCAAGCTGTGAGAGTAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:5134581 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5134581 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:14178 same embryo
 EMAGE:14174 same embryo
 EMAGE:14176 same embryo
 EMAGE:14175 same embryo
 EurExpress:euxassay_003958 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS