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EMAGE:14178

Samd4b sterile alpha motif domain containing 4B ( MGI:2448542)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14178 EMAGE:14178
euxassay_003950_01 euxassay_003950_02

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14178Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14178_wholemount_strong.wlz
14178_wholemount_moderate.wlz
14178_wholemount_weak.wlz
14178_wholemount_possible.wlz
14178_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14178_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4946
Entity Detected:Samd4b, sterile alpha motif domain containing 4B ( MGI:2448542)
Sequence:sense strand is shown

>T4946
GACTAGTTCTAGATCGCGAGCGGCCGCTCCGCCCACGCGTCCGCCCACGCGTCCGGCGGCTGCCCGAGGA
GGTGCGGGTGGCGGCGGCGGCGGCGGAGGCCGAGGCGGAGCCTGGAGAGGTGTGGCTGGACCAAGACCTC
CCCTGATGTAAGCAGGCTCCCTCCTCCCCCCACCACCCGTTGCCACCACGCCAGGGGACATCCTCAAGCC
CTGGCCCTTAGGGGAGAGGTAACAGGAGCCCAGAGCCGAGACCATGTGACGGCGCTGGCCCTTGCCACCG
CCGTCCCCCAACCCTGGCCCCAGGCCTGGCACCATGATGTTCCGAGACCAAGTGGGCATCCTCGCTAGCT
GGTTCAAGGGCTGGAATGAGTGTGAACAGACAGTGGCCCTGCTGTCCCTTCTGAAGCGGGTCACCCGTAC
CCAAGCCCGCTTTCTGCAGCTCTGCCTGGAGCACTCGCTGGCGGACTGCAATGATATCCACCTGCTGGAG
TCAGAGGCCAACAGTGCTGCCATCGTCAGCCAGTGGCAACAGGAGTCCAAAGAGAAGGTGGTGTCCCTCC
TGCTGTCCCATCTGCCCCTGCTCCAGCCAGGCAACACGGAGGCCAAGTCCGAGTACATGAGACTGCTGCA
GAAAGTGCTGGCCTACTCCATCGAGAGCAATGCCTTCATTGAGGAGAGCCGCCAACTCCTCTCCTATGCC
CTCATCCACCCAGCCACCACACTGGAGGACCGCAATGCGCTAGCCCTCTGGCTGAGCCACCTGGAAGAGC
GGCTAGCTAGTGGTTTCCGCACCCGGCCAGAGCCCTCCTACCATTCACGCCAGGGCTCAGATGAATGGGG
TGGACCTGCAGAGCTGGCCCCTGGAGAGGCAGGGCCAGGCTGGCAGGACAAGCCACCCAGGGAAAATGGA
CACGTACCCTTCCACCCATCCAGCTCTGTGCCGCCGGCCATCAACAGTATTGGGAGCAATGCAAACACAG
GTCTCCCCTGCCAAATCCACCCTAGCCCACTGAAGCGCTCCATGTCACTCATCCCTACGAGCCCACAGGC
CCCTGGTGAGTGGCCGAGTCCAGAGGAGCTTGGGGCCCGGGCTGCTTTCACCACGCCCGACCACGCACCC
CTCTCGCCACAGAGCAGTGTGGCCTCCTCTGGCAGTGAGCAGACGGAGGAGCAGGGCTCCAGCCGGAACA
CTTTCCAGGAGGATGGCAGCGGGATGAAAGATGTGCCCTCATGGCTCAAGAGCCTCCGCTTGCACAAGTA
TGCTGCTCTGTTCTCACAGATGAGCTACGAAGAGATGATGACCCTCACTGAGCAGCACCTAGAGTCGCAG
AATGTCACCAAAGGTGCCCGGCACAAGATAGCCCTGAGCATCCAAAAGCTGCGGGAGAGACAGAGCGTCC
TCAAGTCCCTAGAGAAGGATGTGCTGGAAGGTGGCAATCTGTGGAATGCTCTGCAGGAACTGCAGCAGAT
CATCATCACTCCTATCAAGGCCTACAGTGTCCTTCAGGCCACCCCTACTGCCAAGGATGAGGGTCGGGGG
GAGCCGCTGCTGCCAGGTGCTGAGCCTCCCCTCACCCACCCTGGATCAGACAAGGGCACTGAGGCCAAGG
ACCCTCCAGCTGCAGAGAACTATCCTCCTCCACCAGCTCCAGCCCCCTCTGATAGCAGTGAGCCAGCCCC
AGCTCCCGTCGCCGACGGAGACATCCCCAGCCAGTTTACACGGGTGATGGGCAAAGTATGCACCCAGCTG
CTGGTGTCCCGACCAGACGAGGAGAACATCACCAGTTACCTCCAGCTCATCGAAAAGTGCCTGACTCATG
AGGCTTTCACAGAGACACAGAAGAAGCGGTTGCTGTCCTGGAAGCAGCAAGTGCTGAAACTCCTCCGGAC
ATTCCCTCGAAAAGCTGCACTGGACATGCAGAGCTACCGGCAGCAGAAGGGCTGGGCATTTGGCTCCAAC
TCGCTCCCCATAGCTGGCTCTGTGGGGATGGGTGTTGCCCGGCGGACCCAGCGGCAGTTCCCAATGCCTC
CTCGGGCATTACCACCTGGCAGGATGGGCCTCCTGAGCCCTTCAGGCATTGGGGGTGTCTCTCCTCGACA
TGCCCTTACCAGCCCCAGTCTTGGGGGTCAGGGCCGACAGAACCTGTGGTTTGCCAATCCTGGAGGCAGC
AACAGCATGCCCAGCCAGAGCCGCAGCTCTGTGCAGCGCACTCACTCGCTCCCAGTTCACTCGTCACCCC
AGGCTATTCTCATGTTCCCTCCAGACTGCCCGGTACCTGGGCCTGACCTGGAGATCAATCCTACCCTGGA
GTCTCTGTGTCTGAGCATGACAGAACACGCCTTGGGTGATGGGACAGACAAAACCTCCACCATCTGACGG
GACCCACAGCCCAGCGCACCCATAGGCTCCCTGGGCGGCGGGCGGGGGCCATCCCCCAACAGGCTTCTCC
TCAGCAGCGAGAGGGTGGGCTGGCGCAGCTATACATTCTGATATTTTTCTACTCATCCTCTTAACTTTTG
TTTAACATTGGCACACGCCTTGCTCACTCCCAGGCCCATTGAGGGATCTCAGCTGAGGCCAGGGACAGAG
AGGGCAGCCAGAGGCAAGGACTGGCCAGACTGCCTGCCTTTTCCCTCCCAAATCCCCCACTAGCCCCATC
CTACCCCTGCCTCCTTCAGACTGCTGACACCTGTCCTTCCCCAAGAGAGCAGACTTCCTCAGAGACAAAC
TGACAGTCACCTTGCGCAACCTGCCCTTCAGACACATGACAGTGGGGGAATGAGCAGTGTGGACAGCCTG
CTCCACCAGTATGTCACTGGAAAAGAGCCCCTCTCCCTTACCTCCTACCTTTCATCATTCCTACCATTCC
TGAAGACAGGCACCACCTTCCTCCTTTTTTTCTTACCCTGTTTATCAGAGGTTCTCTACAATTAATTTCT
TAGGCCTATTTAAGATACATATTTATATAGTTCTTAACGGTTTTTCTCTGATCATTCCCTGTCATTTTTA
GAATCCCTAGGCCTCTCTCTGAGCCAGGACAGTGGCAGGGGGGGCCTGAACTTTATGAGGAGAGGGCAGA
GCCCCCTCCTGCAGACCCTCTTGCCCTTCCCCATCCCAGCCCAGGCTCCCAGATGCAGAGGTTGAAGGTG
GGCAGCCCCAGGCCCTCAGTGAGGTCAGGAAGTCTGTTGCCTTAATGTCCCTTTCCCCCCACCAACATAA
CCCTTCTCTGTTCCCCAGGTCTGTGCAAGACTTGAGGGTAGGAACCAGGGAATGGGGGGTGTTGGGTTTT
TGTTTTCTTGCCTACCCTCTCTGTCAAACTTTCCCACCCCCATTATGTCATGACCTCATGTAAGTGGAAC
ACTATATCATAACCCAGAGGTGCAGCCCAGCCTGAGTCACATAAACCCTCTACTCCCTGTTCTTGATGAG
GGCTGGTGCTGGGGCCCAGGTGGAGGGAGGGAATTTGGGATTCAGGCTGTGGGGAAGCCAGGGTCCCCTA
TTCCAAACTCCTCTTTCCCCTCAACCTACACCCTCATTGGGACATTCTCAAGCTTTTCACACGAAAAGGA
AAAAAATGTTATTTTTAGATACATTTTATGAATAACTTTTGTTATGAATATGGCTGGTAACCATTGTGTA
TGTTATTAAAGATACAAAATGTTGGGAAAAAACAAAACCAAAAAAAAGAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:5132736 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5132736 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:14174 same embryo
 EMAGE:14176 same embryo
 EMAGE:14177 same embryo
 EMAGE:14175 same embryo
 EurExpress:euxassay_003950 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS