EMAGE mouse gene expression spatial database

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EMAGE:14388

Mgat1 mannoside acetylglucosaminyltransferase 1 ( MGI:96973)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_004219. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_004219_01	euxassay_004219_02	euxassay_004219_03	euxassay_004219_04

euxassay_004219_05	euxassay_004219_06	euxassay_004219_07	euxassay_004219_08	euxassay_004219_09

euxassay_004219_10	euxassay_004219_11	euxassay_004219_12	euxassay_004219_13	euxassay_004219_14

euxassay_004219_15	euxassay_004219_16	euxassay_004219_17	euxassay_004219_18	euxassay_004219_19

euxassay_004219_20	euxassay_004219_21	euxassay_004219_22	euxassay_004219_23

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

14388_wholemount_strong.wlz

14388_wholemount_moderate.wlz

14388_wholemount_weak.wlz

14388_wholemount_possible.wlz

14388_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:14388_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T4159
Entity Detected:	Mgat1, mannoside acetylglucosaminyltransferase 1 ( MGI:96973)
Sequence:	sense strand is shown >T4159 GGTGGGGCCTGCGGGCGGCAGGGACCTGGCCCCGGCCTGGATCTGGAGCCGGGAGGGCGGAGGCTCCCAG CCCGGACCGATGGGCGGGGCCCAGGTTCCCACAGAGATCAGCCTCCCGGGCCATGTTGGTGTTAAAGCCT GTTTCTTCTCCTGAGCCCCGGCAGAACACAAGTGGACCAGTGGATGACTTCTCTTGTCTGAGCAAGAGAT GGCCTAATCCCTGCAATCTCTCTACCACTGGCCTCTGAGCTGTAAAAGCCAGCTGGATGAAGGGATGTAA CACGCGCCTGGGAGGGACACTGAAGTCAGGAGTGGGGGGGGAGGGGCCCGGACACACCCCTTCCCCCCCC AGACTCCTCCCCATCAGGGTGCACGTGGCCATGGACTTTGGACCTGGATAAGTGGAGAGAAGCTGTACTT TGGGGGATCTGATTCTCAGTTTTGGAAATGAAGTATTAGGTTGGGGGAGGGGGCGGGGTTGATGATCTTC AGGGAAGCGACAGAGAGAAGAAAAGAAAGGTACATGGCTTCTTCCTACTCTCAGCCTAGAAGAATAAACC CTTAGTGTGGGGACCTGAGCCAGGCAAGCCAAAGGCAGCCTTGAGCCCTCCCTCCCCTGCCCTCCCCTGC GGGGGCCAGGATGCTGAAGAAGCAGACTGCAGGGCTTGTGCTTTGGGGTGCTATCATCTTTGTGGGCTGG AATGCCCTGCTGCTTCTCTTCTTCTGGACACGCCCAGCACCTGGCAGGCTGCCCTCAGACAGCGCCCTTG GTGATGACCCTGCCAGCCTCACCCGTGAGGTCATCCACCTGGCCGAGGACGCTGAGGCGGAGTTGGAGCG GCAGAGGGGACTGTTGCAGCAAATCAAGGAGCATTATGCTTTGTGGAGGCAGAGGTGGAGAGTTCCCACT GTGGCCCCTCCAGCCTGGCCCCGTGTGCCTGTGACCCCCTCACCAGTGCAGATCCCCATCCTGGTCATTG CCTGTGACCGCAGCACTGTCCGGCGCTGCTTGGATAAGTTGTTGCACTATCGGCCCTCAGCTGAGCGTTT CCCCATTATTGTCAGTCAGGACTGTGGGCATGAAGAGACAGCACAGGTCATTGCTTCCTATGGCACTGCA GTCACACACATCCGGCAGCCGGACCTGAGTAACATTGCCGTGCAGCCAGACCACCGCAAGTTCCAGGGTT ACTACAAGATTGCCAGGCACTACCGCTGGGCACTAGGCCAGATCTTCAACAAGTTCAAGTTCCCGGCCGC TGTGGTAGTGGAGGATGATCTGGAAGTGGCACCAGACTTCTTTGAGTACTTCCAGGCCACCTACCCACTG CTGAGAACAGACCCCTCCCTTTGGTGTGTGTCTGCTTGGAATGACAATGGCAAGGAGCAGATGGTAGACT CAAGCAAACCTGAGCTGCTCTATCGAACAGACTTTTTTCCTGGCCTTGGATGGCTGCTGTTGGCTGATCT GTGGGCAGAGCTGGAGCCCAAGTGGCCCAAGGCCTTTTGGGACGACTGGATGCGCCGACCTGAGCAGCGG AAAGGACGGGCTTGTATTCGTCCAGAAATTTCAAGAACTATGACCTTTGGTCGCAAGGGTGTGAGCCACG GGCAGTTCTTTGACCAGCATCTTAAGTTCATCAAGCTGAACCAGCAGTTCGTCCCCTTCACCCAGTTGGA CCTGTCGTACCTGCAGCAGGAGGCCTATGACCGGGACTTCCTCGCCCAGGTCTATGGTGCCCCCCAGCTA CAGGTGGAGAACTTAAGGACCAATGATCAGAAGGAGCTGGGGGAGGTGCGGGTACAGTACACTAGCAGAG ACAGCTTCAAGGCCTTTGCTAAGGCCCTGGGTGTCATGGATGACCTCAAGTCTGGTGTCCCCAGGGCTGG CTACCGTGGCATTGTCACTTTCCAGTTTCGGGGCCGGCGTGTGCACCTGGCACCCCCACAGACATGGACT GGCTATGATCCTAGCTGGAATTAGCAGCACCTGCCTTTCCCTCCTGGGTCTCCTTGCCGCGTGCTGAGCC GAGGCAGGCCTGCAGGGCCTGGGCTACACCATCCTGCCAGTGTCTCCCTCTCAGTGTCTCCCTCTTGGAT CTGTAGATCTTCCCTTTGTGTCCTGGCCAGCCCCCAAATGGCATTCTAGTGCACAAATCATAGGATGAGA GTTATACTCCTGTTGTCAAGGGAGTATTGTGTGGTATGTTCGGGGCATATTGAACAAGAAACCACTGTGT GGTATGGGGAGGGTTGGGCCTGTTGGGGCCAGGTTTGTAATGTCTCCAAGGGCATCTGCAGAGAGCTTGG CAGCTCCAGCTCTCCTCAGCAGGCCTCTCCACCCTGATCTGGCCCCTGTTAGCCCATGAGCCCTCTTTAT GTACCCATCCTCCCTTTCTGAACCTTCCCTCAGGGTGGGGCTGGATTATGGAGGAAGGAATGGATCTTTG GTCAGATGAGACTAACAGAGGGACTCACTGTCAGAGTTAGCGTGGATTGCTGCTGCCGGGGCACTACCTC CTGGCTTCTCTCCCTGCTGACGTGGCTCTTGTCCTGGAGCAGAGCAGTGCGTTGTTGGGAGATGGAAAGT CTATGCGTGGGTACCCGGTCTTCTTGCCTGTGGCCCCCCTCCTTTCTGAAAGTTAGTTCTCTCCGCATTC TTTAGGAGGATTCAGGGGCGGCCTAGTGGAAGACAGTGGGCTCCATGCCTCTTTCCCCTGGGGTTTGCTT CAGGGGCTCCTCCCCGAGGGCTTGCTCCTGGTGGCAGCAGCTGAGATCAGGACATCTGTGGCCCTGAGCC GGCTCTGGTCCTCGGCCTTTCCCAGCCTTCCCACATCTTCCCAGGCCAAGATGCAGGGGGCAGGCTGAAG AGAAATTTGTGTGTCCTTGTTTGTTGCCTGATCTTAGTTTCATGGAAGAAGAATGGAATCTACAGAATTA TTTTCAAAAATAAAGTAAAGGCTGAATTGCTGAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:4483519 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4483519 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:14386 same embryo
	EMAGE:14387 same embryo
	EMAGE:14390 same embryo
	EMAGE:14389 same embryo
	EurExpress:euxassay_004219 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source