EMAGE mouse gene expression spatial database

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EMAGE:14391

Cntfr ciliary neurotrophic factor receptor ( MGI:99605)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_004215. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_004215_01	euxassay_004215_02	euxassay_004215_03	euxassay_004215_04

euxassay_004215_05	euxassay_004215_06	euxassay_004215_07	euxassay_004215_08	euxassay_004215_09

euxassay_004215_10	euxassay_004215_11	euxassay_004215_12	euxassay_004215_13	euxassay_004215_14

euxassay_004215_15	euxassay_004215_16	euxassay_004215_17	euxassay_004215_18	euxassay_004215_19

euxassay_004215_20	euxassay_004215_21	euxassay_004215_22	euxassay_004215_23

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

14391_wholemount_strong.wlz

14391_wholemount_moderate.wlz

14391_wholemount_weak.wlz

14391_wholemount_possible.wlz

14391_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:14391_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T7847
Entity Detected:	Cntfr, ciliary neurotrophic factor receptor ( MGI:99605)
Sequence:	sense strand is shown >T7847 CGGCAGTGGGATCCGGCCGCAGTGCTCGCTCCGCGCTCCTGCCTCGCTCCCCGCCTGCAGCGGCCGAAGG GCGCGGCGCGGAGCCCGGGTGGCCCGAGGGCGCGAACCCTGCCCCGTCACATCATCCCAGGAAGACTTTG GTCTGGAGAGGAGGATAATATTGATGTGTGTGGAGAACAGCTGGTGGTAACGAGATGGCTGCTTCTGTCC CATGGGCCTGCTGTGCTGTGCTTGCCGCTGCCGCCGCCGCTGTCTACACGCAGAAACACAGTCCACAGGA GGCACCCCACGTGCAGTATGAGCGTCTGGGCGCAGATGTGACGCTGCCGTGTGGGACAGCGAGCTGGGAC GCAGCTGTGACATGGAGGGTAAACGGGACAGATCTGGCCCCTGACCTGCTCAACGGCTCTCAGCTGATAC TGCGAAGCTTAGAACTGGGCCACAGTGGCCTATACGCCTGTTTCCACCGTGACTCCTGGCACCTGCGCCA CCAAGTCCTTCTACATGTGGGTTTGCCGCCGCGGGAGCCTGTGCTCAGCTGCCGCTCCAACACTTACCCC AAGGGCTTCTACTGCAGCTGGCACCTGCCCACCCCCACCTACATCCCCAATACCTTCAATGTGACTGTGC TGCATGGCTCCAAAATTATGGTCTGTGAGAAGGACCCAGCCCTCAAGAACCGCTGCCACATTCGGTACAT GCACCTGTTCTCAACCATCAAGTACAAGGTCTCCATAAGTGTCAGCAACGCCTTGGGTCACAACACTACG GCCATCACCTTTGACGAATTCACCATTGTGAAGCCTGATCCTCCAGAAAACGTGGTGGCCCGGCCAGTGC CCAGCAACCCCCGTCGGCTGGAGGTGACATGGCAGACACCCTCAACTTGGCCCGACCCTGAATCCTTTCC TCTCAAGTTCTTCCTGCGCTACCGGCCTCTCATCCTGGACCAATGGCAGCATGTGGAGCTCTCGGATGGC ACAGCACACACCATCACAGATGCCTACGCAGGGAAGGAATACATCATCCAGGTGGCAGCCAAGGACAATG AGATTGGGACATGGAGTGACTGGAGCGTGGCTGCTCACGCCACACCCTGGACTGAGGAACCTCGGCATCT CACAACAGAAGCCCAGGCCCCCGAGACCACGACCAGCACCACCAGCTCATTGGCACCCCCACCCACCACG AAGATCTGTGACCCTGGGGAGCTTGGCAGCGGCGGAGGACCCTCCATACTCTTCTTGACCAGTGTCCCAG TCACTCTGGTCCTGGCTGCCGCTGCTGCCACAGCCAACAATCTCCTGATCTGAGCCCTGCATCCCACGAG GACATGCCAGAGCGCCTGCGGAGGAGCAGGAGGCCGGAGCTGAGCCTGCAGACCCCGGTTTCTATTTTGC ACACGGGCAGGAGGACCTTTTGCATTCTCTTCAGACACAATTTGTAGAGACCCCGGCAGGCCCGGGCCTG CCTTCCGTCCCCCCAGCCTCATCTCACCAAGCCGGCCCTCCTTTCCATCCAGAGAGGAGGACCATGCAGC TAACCCACCCACCAAAGACCCCTCTCATCTTTCCCCCCTCGGGCTGGACCCTCCAACGCCAGCGACTCCC AGGAGCCCTTGGGGGACCTGAGGGGAGCCCCCACCCCACATCCACAGTTTTCTCCTCCTGCCCCAGCCTC CTGTCTGTCCCAGGGTCTTTGTTGCCACCATCAGATTATAAGCTCCTGACACTGGGGGGGCCCAGCCATC CCCCTCCCCCCGGTGCCCACACTTTTCAGTCCTTCCACCTTTGCCCCTGTTTTGTACGATCCTCCATTGG CCCTTTCCTACCCCCCAGTATTTAATGTCCTGTCAGTCCCTTCTAGTCTGACTCAATGGTAACTTGCTGT ATTTGAATTTTTTATAGATGTATATACATGGGAGGGAGGGGTAGGGAGTTCTCATTAAACGTCACCATTT CATGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:6389656 using vector (pCMV-SPORT6.1) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6389656 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:14393 same embryo
	EMAGE:14395 same embryo
	EMAGE:14392 same embryo
	EMAGE:14394 same embryo
	EurExpress:euxassay_004215 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source