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EMAGE:14455

Kptn kaptin ( MGI:1890380)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14455 EMAGE:14455 EMAGE:14455 EMAGE:14455 EMAGE:14455
"Pseudo-wholemount" of euxassay_004299. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_004299_01 euxassay_004299_02 euxassay_004299_03 euxassay_004299_04
EMAGE:14455 EMAGE:14455 EMAGE:14455 EMAGE:14455 EMAGE:14455
euxassay_004299_05 euxassay_004299_06 euxassay_004299_07 euxassay_004299_08 euxassay_004299_09
EMAGE:14455 EMAGE:14455 EMAGE:14455 EMAGE:14455 EMAGE:14455
euxassay_004299_10 euxassay_004299_11 euxassay_004299_12 euxassay_004299_13 euxassay_004299_14
EMAGE:14455 EMAGE:14455 EMAGE:14455 EMAGE:14455 EMAGE:14455
euxassay_004299_15 euxassay_004299_16 euxassay_004299_17 euxassay_004299_18 euxassay_004299_19
EMAGE:14455 EMAGE:14455
euxassay_004299_20 euxassay_004299_21

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14455Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14455_wholemount_strong.wlz
14455_wholemount_moderate.wlz
14455_wholemount_weak.wlz
14455_wholemount_possible.wlz
14455_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14455_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T7225
Entity Detected:Kptn, kaptin ( MGI:1890380)
Sequence:sense strand is shown

>T7225
TGACAGGTTGGGGAGCATCAGGCCATCTGGGACCGATCGCGGAGGGCCAGGATGGGGGAGGCGGCCGTGG
CAGAGGGACCTTGTCCACTGCTGGAGGACAGCTTCACGCGCTTCTCGTCGCAAAGCAACGTGTACGGGCT
TGCTGGAGGCGCGGACGGGCGAGGGGAGTTGCTGGCCGCCACTCTTAAAGGCAAGGTGCTCGGCTTCCGC
TATCAAGACCTCCGACAGAAAATCCGGCCTGTGGCTAAAGAGCTGCAATTCAACTACATTCCCGTGGATG
CTGAGATCGTCTCCATCGACACTTTCAACAAGTCACCCCCAAAACGGGGCCTGGTTGTGGGCATCACTTT
TATAAAGGACTCAGGAGACAAGGGCAGTCCGTTTCTTAACATTTACTGTGACTATGAGCCTGGCTCAGAG
TACAACCTGGACTCTATTGCAGAGAGCTGCCTGAATTTGGAACTCCAGTTCACACCTTTCCAGCTGTGCC
ACGCAGAAGTCCAGGTTGGGGACCAACTGGAGACGGTGTTTCTGCTGAGTGGGAACGATCCAGCTATTCA
TCTCTACAAGGAGAATGAGGGACTACATCAGTTTGAGGAGCAGCCCGTGGAAAACCTCTTTCCAGAGCTC
ACGAACCTGACCAGTAGTGTCCTTTGGCTTGATGTCCACAACCTCCCTGGCTCATCCCAGCGGCTCTCGG
CTCTCGGCTGCCAGAGTGGTTATGTGCGTGTGGCTCACGTGGACCAGAAGAATCAAGAGATCTTGCAGAC
ATGGACAATCCAGCAGGATGGGCCCATCTCCCGAGTGATTGTGTTCAGCCTGTCAGCCTCGGAGGCAACA
CAGGACAGCCCCCAGCAGGAAGGATACAGTCTGCTTGTGGCCAGCATGCTGGAGCCAGCTGTGGTGTACT
GGGATCTTCTGAACAAGGGTCTGGATGACCAACTTCTCCTGCCTGGCAGTGACCAGTTTGACAGCGTCCT
CTGTGGCCTGGTCACTGACGTGGACCTAGATGGACAACTGGAAGTCCTGGTGGCCACCTATGGACAGGAG
CTGCTCTGCTATAAGTATCGTGGACTGCCAGAGGACAGCAGAGGCTTCCGCCTGCTGTGGCGCAGGAGCT
TCGCCAGCCCCCTGCTGGCCATGGCCCATGTGGACCTGACTGGAGATGGCCTGCGGGAGCTGGCCGTGAT
ATCCCTGAAAGGGGTGCACATCCTCCAGCACAGCCTGATCCAGGCCTCTGAACTGGTCTTGACACGGCTT
CGTCATCAAGTGGAGCAGAGGAAACATCAGCAGGGCCTTGGGGACAGAGTTGGGCCCAGGCCTGTGGAAC
ACCCAGCCTCCTGAGCACTCCATCTTTTCAGGTGTGGGCACCTCGTATCTATCATTGTTGATGGGGAGCG
AAGCATCTTAGAAGAGGAGTGTGCCCCTTGGACTCCCTCAGAAGGGGAATTCTAAGAGTCCCTGACCCAC
CCTGCTGTGTTGTGTGACCCTAGCTGATAACTCCTGTCTGAGCCATTTGAAAAGGGATGTTTTCAGCCAA
CCTCTGCTCCCATCAGGTGTTGGTCCCTGAGGACCATTTACACATTCAGAGCAACAAAGCTGTCCTGGCT
GTCTTAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:4160465 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4160465 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:14459 same embryo
 EMAGE:14457 same embryo
 EMAGE:14458 same embryo
 EMAGE:14456 same embryo
 EurExpress:euxassay_004299 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS