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EMAGE:14503

Trnt1 tRNA nucleotidyl transferase, CCA-adding, 1 ( MGI:1917297)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14503
euxassay_005558_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14503Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14503_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14503_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4173
Entity Detected:Trnt1, tRNA nucleotidyl transferase, CCA-adding, 1 ( MGI:1917297)
Sequence:sense strand is shown

>T4173
GCGGCCCGGGCAGCAGGCGGATGTGTGATTGGCGACTTGTCTCCAGATGCAGAGCGTCCTGTATCCTTGG
CACAGGCAGGTCCTGAGGTGTAGTTGGAGTAGATTGTGCCTTCTGAAGCGATACCTGTTTACAATGAAGT
TGCAGTCCCCAGAATTCCAGTCCCTTTTCACCGAAGGATTGAAGAGCCTGACAGAATTATTTGCCAAAGA
GAATCATGAATTAAGAATAGCAGGAGGAGCAGTGAGGGATTTACTGAATGGGGTGAAGCCTCAAGATGTG
GATTTCGCCACCACTGCCACCCCTACTCAGATGAAGGAGATGTTCCAGTCAGCTGGCATTCGCATGATCA
ACAACAAAGGAGAGAAACATGGGACTATCACTGCCAGGCTTCATGAAGAAAATTTTGAAGTTACTACACT
CCGAATTGATGTTACCACTGATGGAAGACATGCAGAGGTAGAATTCACAACTGACTGGCAGAAAGACGCT
GAACGAAGAGATCTCACTATAAATTCTATGTTTCTAGGTTTTGATGGTACACTGTTTGATTACTTTAATG
GTTATGCAGATTTAAAAAATAAAAAGGTTCGATTTGTTGGACATGCAAAACAGAGAATTCAGGAAGATTA
TCTTCGAATTTTAAGGTATTTCAGGTTTTATGGCAGAATTGTCGACAGACCTGGTGACCATGACCATGAG
ACTCTAGAAGCAATTGCAGAAAATGCCAAAGGTTTGGCTGGAATATCAGGAGAGAGGATTTGGGTAGAAC
TGAAGAAAATTCTTACTGGTGACCATGTAAACCATTTGATCCACCTGATCTATGATCTTGGTGTGGCTCC
TCACATAGGTTTACCTGCTAATGCAAATTTAGAAGAATTTAACAAAGTCAGTAAAAATGTTGAAGGCTTT
TCACCAAAACCAATGACTCTTTTGGCTTCTTTATTCAAAGTACAAGATGATGTCACAAAATTGGACTTGA
GATTGAAAATTTCAAAAGAGGAGAAAAACCTGGGTTTATTTATAGTTAAAAACAGGAAAGACTTGATTAA
AGCAACAGATAGTTCAGAACCATTGAAACCATACCAAGACTTTGTGATAGACTCTAGGGAACCAGATGCA
ACTGCCCGTGTTTGTGAGCTGCTGAAGTACCAAGGAGAGCATGGTCTTCTCAAAGAGATGCAGCAGTGGT
CTGTCCCGCCGTTCCCTGTGAGTGGACATGACATCAGGAAAGTGGGTATTTCTTCAGGGAAGGAAATTGG
GGCCCTGCTACAGCAGTTGCGTGAACAGTGGAAGAAAAGTGGTTACCGGATGGAAAAAGATGAACTACTA
AGTTACATAAAGAAGACCTAAAGATGAGCCCTGTATGAAACAGGGGAAGTCTTGAAAGTTCATCTAAAAC
TAAATGAAGAGTCAACAAGAAAAGTAAACAGCTGTATTACCCGGGAAACCAGCTGTGCACTGTAGAAGGC
CGGCCTATCAGATTCAGGTTGGACGCTTTATACACAGTCAGTGTCTCATGTACATATCCATGAGGATTCA
CATATGCTGCCATTGGACCACATAAGGATAAACTACAGACAAAGAAATAATGTGGAGAATAAGACAATGA
AAAGAAAAATAGTAATCCCAGTTTTTTACTTATTTGGGACATAAGTTATGCTTTTTAACCTTTGAATTTT
AGATATTATATAGTACTTTGTGTAAAATGTAAGACAAGTATACAGGAGGTTGGCAGATATTCTGTTGCTT
AAAAATGTTCTTTGATGATTCAAAGGTAAATATATGTGTTTACAAAGCCTAGTGAGGTCATGTTTTCATC
TTTGGACATTTAGTTACTTTACCTACATATCAGTTTCCTGACCTTCTTGATCTGTAGTTCTAATGAATTC
ATCAAAGTGTTAAGCTTCACAGCATCAGCACATGTTCAGAGACCCACCCAATTTTGGTCCCGTGTAGCAG
AACTAGCTGAAGTATAATGCTTGAAGCATTCCTATTATGCTTTAAGATAGGATGTGTCTAAACAAAAATT
GAGGGGAAAAAGACTGTATTACAGATGTTTCCAGGCTGTAAGACAGCTTGCCCTGTGTTTATCTCCTTTA
CTGAGATAAACGCATATTTTTTAGGCACTGGAGAAAATATGGAAAGTGGAACCACAGAAGGGAATATGGA
AATATATTAAAAATGTAATAAAGATCTTTCCTAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:4486420 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4486420 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:14508 same embryo
 EMAGE:14505 same embryo
 EMAGE:14504 same embryo
 EMAGE:14506 same embryo
 EMAGE:14507 same embryo
 EurExpress:euxassay_005558 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS