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EMAGE:14511

Hax1 HCLS1 associated X-1 ( MGI:1346319)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14511 EMAGE:14511 EMAGE:14511 EMAGE:14511 EMAGE:14511
"Pseudo-wholemount" of euxassay_005375. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_005375_01 euxassay_005375_02 euxassay_005375_03 euxassay_005375_04
EMAGE:14511 EMAGE:14511 EMAGE:14511 EMAGE:14511 EMAGE:14511
euxassay_005375_05 euxassay_005375_06 euxassay_005375_07 euxassay_005375_08 euxassay_005375_09
EMAGE:14511 EMAGE:14511 EMAGE:14511 EMAGE:14511 EMAGE:14511
euxassay_005375_10 euxassay_005375_11 euxassay_005375_12 euxassay_005375_13 euxassay_005375_14
EMAGE:14511 EMAGE:14511 EMAGE:14511 EMAGE:14511 EMAGE:14511
euxassay_005375_15 euxassay_005375_16 euxassay_005375_17 euxassay_005375_18 euxassay_005375_19
EMAGE:14511 EMAGE:14511 EMAGE:14511 EMAGE:14511 EMAGE:14511
euxassay_005375_20 euxassay_005375_21 euxassay_005375_22 euxassay_005375_23 euxassay_005375_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14511Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14511_wholemount_strong.wlz
14511_wholemount_moderate.wlz
14511_wholemount_weak.wlz
14511_wholemount_possible.wlz
14511_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14511_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T8316
Entity Detected:Hax1, HCLS1 associated X-1 ( MGI:1346319)
Sequence:sense strand is shown

>T8316
GGCACGAGGCGACAGGGTAGCGTAAGCTGGTCGTGGTCTCGTGTTGCCCATGGGCTGCAGAGCTTCAAAG
TTTCTAGTGCCCCTACTGGAATGAGCGTCTTTGATCTTTTCCGAGGCTTTTTCGGCTTTCCTGGACCTCG
GAGCCACAGAGATCCTTTTTTTGGAGGGATGACTCGAGATGATGACGACGATGATGATGATGATGACGAA
GCGGAGGAAGACAGAGGCGCGTGGGGTCGAGAGAGCTATGCGTTTGATGGTTCTCAGCCTCCAGAGGAAT
TCGGTTTCAGCTTCAGCCCCAGGGGAGGGATGCGATTCCACGGCAACTTTGGCTTTGATGATCTAGTACG
AGATTTTAATAGCATCTTCAGCGAGATGGGGGCCTGGACCTTGCCTTCCCACTCTCCTGAACTTCCAGGT
CCTGAGTCAGAAACACCTGGTGAGAGACTGCGGGAGGGGCAGACACTACGAGACTCAATGCTTAAGTACC
CAGATAGTCACCAACCCAGGATCTTTGAGGGGGTCTTGGAGAGTCATGCAAAACCTGAATCCCCAAAACC
AGCTCCAGATTGGGGGTCGCAGGGACCTTTTCATAGGTTGGATGATACATGGCCTGTGAGTCCCCATTCT
AGAGCCAAAGAGGACAAAGATCTTGACTCCCAGGTTTCCCAGGAAGGTCTGGGTCCACTTCTTCAACCCC
AGCCCAAATCGTATTTCAAAAGTATCTCTGTGACCAAGATCACTAAGCCAGATGGGACAGTGGAGGAACG
CCGCACTGTGGTAGACAGTGAGGGCCGGAGGGAGACCACAGTGACCCATCAAGAAGCCCATGACAGTTCC
AGAAGTGATCCAGACTCTCAGAGATCTTCAGCTTTGGATGATCCCTTTTCCATTCTGGATTTGCTACTAG
GACGTTGGTTTCGGTCCCGATAGCGTTCTTAAACAGAGGCCTTCAGGTCCTTCCCACTCCCTTCCTGTTG
CCCATTGCCAATAAGCTTAGCTCTGTCTGTCATCCCAGGGTCTTAAATGTGTGAAACAATTAATTGAGCT
TATGCCAGTCTGTCATTCATCCAAATTGACCAATAAAGCCTTTATTTATGCTAAAAAAAAAAAAAAAAAA
AAAAAAAAAGA
Notes:The probe template was PCR amplified from IMAGE:1494110 using vector (pT7T3D-PacI) specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:1494110 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:14515 same embryo
 EMAGE:14513 same embryo
 EMAGE:14514 same embryo
 EMAGE:14516 same embryo
 EMAGE:14512 same embryo
 EurExpress:euxassay_005375 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS