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EMAGE:14779

Clcnkb chloride channel Kb ( MGI:1930643)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14779
euxassay_005700_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14779Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14779_wholemount_moderate.wlz
14779_wholemount_weak.wlz
14779_wholemount_possible.wlz
14779_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14779_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T7309
Entity Detected:Clcnkb, chloride channel Kb ( MGI:1930643)
Sequence:sense strand is shown

>T7309
GGAGCTACAAACAAAGAAGCTGTGTTGGAGGAGGGCCTGTTGGGGCTTCAGCAGGGCACACTGACAGAGA
AACCATGGAGGAATTAGTGGGGCTTCGTGAGGGCGCCTCCAAGAAGCCAGTGCCACTGCAAGAACTCTGG
GGGCCATGCCCACGTATCCGCAGAAACATCCAGGGGGGCCTAGAGTGGCTGAAAGAGCGGCTCTTCCGTG
TGGGTGAGGACTGGTACTTCCTGGTGGCTCTCGGGGTGCTCATGGCTCTAATCAGCTATGCTATGAACTT
CACTATTGGGCGCGTGGTCAGAGCACACAAGTGGCTGTACAGGGAGATTGGAGACGGCCACTTGCTCCTG
TACCTCTCCTGGACCGTGTACCCCGTGGCTCTTCTGTCCTTCTCCTCCGGCTTCTCACAGAGCATTACGC
CATCCTCTGGAGGGTCTGGAATCCCTGAGGTGAAGACCATCTTGACCGGAGTGGTCCTGGAGGACTACCT
AGACATCAAGAACTTTGGGGCCAAGGTGGTGGGCCTCTCCTGCACCCTGGCCACAGGCAGTACCATCTTC
CTGGGAAAACTGGGCCCCTTCGTGCACCTGAGCGTGATGATCGCTGCTTACCTGGGCCGCGTGCGCACCA
AGACCGTCGGGGAACCTGAGAGCAAGACCAAAGAAATGGAACTGTTGGCCGCAGGAGCAGCAGTGGGTGT
GGCCACGGTCTTCGCAGCTCCCATCAGCGGTGTCCTGTTCAGCATCGAGGTCATGTCCTCTCACTTCTCC
GTCTGGGATTACTGGAGGGGCTTCTTCGCTGCCACCTGTGGGGCCTTTATGTTCCACCTCCTGGCGGTCT
TCAACAATGAACAGGAGACCATCACCTCCATCTACAAGACCAGCTTTCCAGTGGACATACCCTTTGACTT
ACCAGAGATCTTCTTTTTTGTGGCCCTGGGGGCCATCTGTGGCATCCTGAGCTGCGGGTACAACTACAGC
CAGCGGACTTTCTTATTTTTCCTCAAGGCCAATGGGTTCACCTCCAAACTGCTGGCTACCAGCAAACCCT
TGTACTCAGCCCTGGCTGCTGTGGTCCTGGCTTCCATCACGTATCCCCCTGGTGTGGGCCACTTCATGGC
TTCCCGGCTGTCCATGTCGGAGCATTTGGAGACACTGTTTGACAACAACTCCTGGGCACTGATGACTAAG
AACTCGTCTCCACCCTGGGCAGCGGAGCCTGATCCCCAGAAGCTGTGGTTGGAGTGGTGTCACCCACAGT
TGACTGTCTTTGGGACACTAGTCTTCTTCCTGGTCATGAAGTTCTGGATGCTGATTTTGGCAACCACCAT
CCCCATCCCTGCTGGATACTTCTTGCCCATCTTTGTCTATGGAGCTGTCATTGGGCGCCTCTTTGGGGAG
GTTCTATCTGTCGCCTTCCCAGAGGGCATTGTGGCTGGAGGCAGGGTCAATCCCATCATGCCCGGGGCCT
ATGCTCTGGCAGGTGCTGCTGCCTTCTCGGGGGCGGTGACCCACACCCTCTCCACGGCACTGCTGGCCTT
TGAGGTAACGGGCCAGCTCGTTCACGCACTGCCTGTGCTGATGGCTGTGCTGGCGGCCAACGCCATCTCT
CAGAGCTTCCAGCCCTCTTTCTACGATGGCACCATCATTGTCAAGAAACTGCCGTACCTGCCTTGGATCC
GTGGCCGACAGATTGGTTCCCACTCTGTAACTGTGGGTCACTTCATGAACTGCACCCTCACTACACTGGC
CAAGGACATGCCCCTGGAGCAAGTGATCCAAGTCATGATCTCCACAGATGTGACCCAGTACCCCCTGGTG
GAGACTACAGAGTCTCAGACCCTGGTGGGCGTTGTAAAAAGGACCCACTTGGTGCAAGCCCTCCAGACTG
AGCCAGCTTCCTGGGCTCCAGGCCAGCAGCCCTATCTCCAGGATATCTTGGCTAATGGCTGCCCCACCCA
GCCAGTGACACTGCAGCTGTCCCCGGAGACCTCCTTGCATGAGACACACAACCTTTTTGAGCTGCTGAAC
CTTCAGACGCTGTTCGTGACGTCACGAGGCAGAGCTGTGGGCTTTGTATCGTGGGTGGAGGTACTGGGGT
CTTGAGGGCTGGGCAACGTTGAGGAGGTGGGGGCACCGAATTCCCTCCAGCCTCGCCTCCTCTAACCTTC
CACCTCCCAGCCCCCACTATCCTCTGTTTCTCTGTCATAGCTGAAGAAAGCAATTTCAACCCTGACCAAT
CCTCCCGCCCCCAAGTGAGTCAGCCTGGGGGGTCGGCAGCCTGGCGCCCAGCTGCTCAGCTGCCATGGAT
CTGGGATCTCTCAGCCCAGCAAGGCATCTCCACTCAGCAGAGAAGAACGCTCCATATTCACACTCCGCTC
CCTGAAGGAGCTGAGAGTAAATGAAGACATCCATGTGTTCTGTCACGTTGTGACCCTTGTGACTTCTGGG
GTTGCCTGCTGCTAACCAGGAGCTTCTGAGAAAAATAAAACTGATGTCTGGAGCCAAAAAAAAAAAAAAA
AAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:4188062 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4188062 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:14777 same embryo
 EMAGE:14781 same embryo
 EMAGE:14780 same embryo
 EMAGE:14778 same embryo
 EurExpress:euxassay_005700 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS