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EMAGE:15367

Vav1 vav 1 oncogene ( MGI:98923)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:15367 EMAGE:15367 EMAGE:15367 EMAGE:15367 EMAGE:15367
"Pseudo-wholemount" of euxassay_010546. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_010546_01 euxassay_010546_02 euxassay_010546_03 euxassay_010546_04
EMAGE:15367 EMAGE:15367 EMAGE:15367 EMAGE:15367 EMAGE:15367
euxassay_010546_05 euxassay_010546_06 euxassay_010546_07 euxassay_010546_08 euxassay_010546_09
EMAGE:15367 EMAGE:15367 EMAGE:15367 EMAGE:15367 EMAGE:15367
euxassay_010546_10 euxassay_010546_11 euxassay_010546_12 euxassay_010546_13 euxassay_010546_14
EMAGE:15367 EMAGE:15367 EMAGE:15367 EMAGE:15367 EMAGE:15367
euxassay_010546_15 euxassay_010546_16 euxassay_010546_17 euxassay_010546_18 euxassay_010546_19
EMAGE:15367 EMAGE:15367 EMAGE:15367
euxassay_010546_20 euxassay_010546_21 euxassay_010546_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:15367Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
15367_wholemount_strong.wlz
15367_wholemount_moderate.wlz
15367_wholemount_weak.wlz
15367_wholemount_possible.wlz
15367_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:15367_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Text Annotation:
StructureLevelPatternNotes
thymus primordium
strong strong
regionalstrong expression: see section 08 09 10 11
liver
weak weak
regionalweak expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T30824
Entity Detected:Vav1, vav 1 oncogene ( MGI:98923)
Sequence:sense strand is shown

>T30824
GCCAGCAAGCACTTGGATCAAGTGGCCACAGCACGGGAGGATGTGCAGATGAAGCTGGAGGAATGTTCTC
AAAGAGCTAACAATGGCCGATTCACCCTACGGGATCTGCTGATGGTACCTATGCAGCGGGTGCTGAAGTA
CCACCTCCTTCTCCAGGAGCTAGTGAAACACACACAGGATGCTACAGAGAAGGAGAACCTGCGGTTGGCC
CTGGACGCCATGAGGGACCTGGCACAGTGCGTGAACGAGGTCAAGAGGGACAATGAAACCCTACGGCAGA
TCACAAACTTTCAGCTGTCCATTGAGAACCTGGACCAGTCTCTGGCTAACTATGGCCGGCCCAAGATTGA
CGGTGAGCTCAAGATTACCTCAGTGGAGCGTCGCTCAAAGACAGACAGGTATGCCTTCCTGCTGGACAAA
GCACTGCTCATCTGTAAACGCCGCGGGGACTCTTACGACCTCAAAGCCTCGGTGAACTTGCACAGCTTCC
AAGTTCGAGATGACTCCTCCGGGGAGCGAGACAACAAGAAGTGGAGCCATATGTTCCTTCTGATTGAGGA
TCAAGGCGCCCAGGGCTATGAGCTGTTCTTCAAGACTCGGGAGCTGAAGAAGAAGTGGATGGAACAGTTC
GAAATGGCCATCTCCAACATTTACCCAGAGAATGCTACAGCCAATGGGCATGATTTTCAGATGTTCTCCT
TTGAGGAGACCACTTCCTGCAAGGCCTGCCAGATGTTACTCAGAGGCACATTCTACCAGGGATATCGCTG
TTACAGGTGCCGGGCACCTGCACACAAGGAGTGTCTGGGGAGAGTGCCTCCCTGTGGTCGCCATGGGCAA
GATTTCGCAGGAACCATGAAGAAGGACAAGCTCCATCGAAGGGCCCAGGACAAGAAAAGGAATGAATTGG
GTCTGCCTAAGATGGAAGTGTTTCAGGAATACTATGGGATCCCTCCTCCACCTGGAGCCTTTGGGCCATT
T
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from the plasmid IMAGE:3965451), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 15845. Forward Primer - name:015845_F_IRAV20-23_A12_Vav1, sequence:GCCAGCAAGCACTTGGAT; Reverse Primer - name:015845_R_SP6_IRAV20-23_A12_Vav1, sequence:AAAATGGCCCAAAGGCTC. The reverse primer contains a 5' extension containing an SP6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using SP6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:15368 same embryo
 EMAGE:15366 same embryo
 EMAGE:15370 same embryo
 EMAGE:15365 same embryo
 EMAGE:15369 same embryo
 EurExpress:euxassay_010546 same experiment
 MGI:4829151 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS