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EMAGE:15376

Smpd2 sphingomyelin phosphodiesterase 2, neutral ( MGI:1278330)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:15376 EMAGE:15376 EMAGE:15376 EMAGE:15376 EMAGE:15376
"Pseudo-wholemount" of euxassay_010568. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_010568_01 euxassay_010568_02 euxassay_010568_03 euxassay_010568_04
EMAGE:15376 EMAGE:15376 EMAGE:15376 EMAGE:15376 EMAGE:15376
euxassay_010568_05 euxassay_010568_06 euxassay_010568_07 euxassay_010568_08 euxassay_010568_09
EMAGE:15376 EMAGE:15376 EMAGE:15376 EMAGE:15376 EMAGE:15376
euxassay_010568_10 euxassay_010568_11 euxassay_010568_12 euxassay_010568_13 euxassay_010568_14
EMAGE:15376 EMAGE:15376 EMAGE:15376 EMAGE:15376 EMAGE:15376
euxassay_010568_15 euxassay_010568_16 euxassay_010568_17 euxassay_010568_18 euxassay_010568_19
EMAGE:15376 EMAGE:15376 EMAGE:15376 EMAGE:15376 EMAGE:15376
euxassay_010568_20 euxassay_010568_21 euxassay_010568_22 euxassay_010568_23 euxassay_010568_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:15376Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
15376_wholemount_strong.wlz
15376_wholemount_moderate.wlz
15376_wholemount_weak.wlz
15376_wholemount_possible.wlz
15376_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:15376_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T30835
Entity Detected:Smpd2, sphingomyelin phosphodiesterase 2, neutral ( MGI:1278330)
Sequence:sense strand is shown

>T30835
TGCAGCCGACCTTCTTTCCGGGTGGAAGGACGGCCTTTGTCCCAGTAACGCAGGAGTCGCCCCCCACCCC
CAACCAGCTCGCGTTCCTGGGTCGGGGCAGCGCAGGACAGGGCAATAAGCCTGTGCGCGCAATCCGCCTC
GCCGCCCTTGCTCCGAAGCACTCCAGCCATGAAGCTCAACTTTTCTCTACGGCTGAGAGTTTTCAATCTC
AACTGCTGGGACATCCCCTACCTGAGCAAACATAGGGCGGACCGCATGAAGCGCTTGGGAGACTTTCTGA
ACTTGGAAAACTTTGATCTGGCTCTCCTGGAGGAGGTGTGGAGTGAGCAGGACTTCCAGTACCTAAGGCA
AAGGCTATCGCTCACCTATCCAGATGCACACTACTTCAGAAGCGGGATGATAGGCAGTGGCCTCTGTGTG
TTCTCCAAACACCCAATCCAGGAAATCTTCCAGCATGTCTACAGTCTGAATGGTTACCCCTACATGTTCC
ATCATGGAGACTGGTTCTGTGGGAAGTCTGTGGGGCTGCTGGTGCTCCGTCTAAGTGGACTGGTGCTCAA
TGCCTACGTGACTCATCTACATGCTGAGTACAGCCGACAGAAGGACATCTACTTTGCACACCGTGTGGCC
CAAGCTTGGGAACTGGCCCAGTTCATCCACCACACATCCAAGAATGCAGATGTGGTTCTATTGTGTGGAG
ACCTCAATATGCACCCCAAAGACCTGGGCTGCTGCCTGCTGAAAGAGTGGACAGGGCTCCATGATGCTTT
CGTTGAGACTGAGGACTTTAAGGGCTCTGATGATGGCTGTACCATGGTACCCAAGAACTGCTACGTCAGC
CAGCAGGACCTGGGACCGTTTCCGTCTGGTATCCGG
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from the plasmid IMAGE:4193282), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 16875. Forward Primer - name:016875_F_IRAV20-23_J02_Smpd2, sequence:TGCAGCCGACCTTCTTTC; Reverse Primer - name:016875_R_SP6_IRAV20-23_J02_Smpd2, sequence:TCCGGATACCAGACGGAA. The reverse primer contains a 5' extension containing an SP6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using SP6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:15378 same embryo
 EMAGE:15377 same embryo
 EMAGE:15381 same embryo
 EMAGE:15379 same embryo
 EMAGE:15380 same embryo
 EurExpress:euxassay_010568 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS