Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:16214

Ubl7 ubiquitin-like 7 (bone marrow stromal cell-derived) ( MGI:1916709)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:16214 EMAGE:16214 EMAGE:16214 EMAGE:16214 EMAGE:16214
"Pseudo-wholemount" of euxassay_017083. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_017083_01 euxassay_017083_02 euxassay_017083_03 euxassay_017083_04
EMAGE:16214 EMAGE:16214 EMAGE:16214 EMAGE:16214 EMAGE:16214
euxassay_017083_05 euxassay_017083_06 euxassay_017083_07 euxassay_017083_08 euxassay_017083_09
EMAGE:16214 EMAGE:16214 EMAGE:16214 EMAGE:16214 EMAGE:16214
euxassay_017083_10 euxassay_017083_11 euxassay_017083_12 euxassay_017083_13 euxassay_017083_14
EMAGE:16214 EMAGE:16214 EMAGE:16214 EMAGE:16214 EMAGE:16214
euxassay_017083_15 euxassay_017083_16 euxassay_017083_17 euxassay_017083_18 euxassay_017083_19
EMAGE:16214 EMAGE:16214 EMAGE:16214
euxassay_017083_20 euxassay_017083_21 euxassay_017083_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:16214Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
16214_wholemount_strong.wlz
16214_wholemount_moderate.wlz
16214_wholemount_weak.wlz
16214_wholemount_possible.wlz
16214_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:16214_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4382
Entity Detected:Ubl7, ubiquitin-like 7 (bone marrow stromal cell-derived) ( MGI:1916709)
Sequence:sense strand is shown

>T4382
GGACCAGAGGAGAAAGAGAGAGCGCGAAAGAGAGAGGATGTCTCTCTCAGACTGGCATCTGGCAGTGAAG
CTGGCTGACCAGCCACTTGCTCCAAAATCTATTCTTCAGTTGCCAGAGACAGAACTGGGAGAATATTCCC
TAGGGGGCTATAGCATTTCATTTCTGAAGCAGCTTATTGCTGGCAAGCTCCAGGAATCTGTTCCAGACCC
GGAGCTGATCGATTTGATCTACTGTGGCCGGAAGCTAAAAGATGACCAGACCCTTGACTTCTATGGTATT
CAGCCTGGATCCACAGTCCATGTTCTCCGAAAATCTTGGCCTGAGCCTGATCAGAAACCTGAACCTGTGG
ACAAAGTAGCTGCCCTGAGAGAGTTCCGGGTCCTGCACACTGCCCTGCACAGCAGCTCTTCCTACAGAGA
GGCGGTCTTTAAGATGCTCAGCAATAAAGAATCTCTGGATCAGATCATTGTGGCCACCCCAGGCCTCAGC
AGTGACCCCATTGCTCTAGGGGTTCTCCAGGATAAGGACCTCTTCTCTGTCTTTGCTGATCCCAACATGC
TAGATACATTGGTGCCTGCCCACCCAGCCCTAGTCAATGCCATCATCCTGGTTCTGCACTCCGTAGCAGG
CAGCACCCCAATGCCAGGAGCTGACTCCTCTTCCCGAAGCATGCCCTCCAGCTCTTACCGAGATATGCCA
GGTGGCTTCCTGTTTGACGGGCTCTCAGATGACGAGGACGACTTTCACCCAAGCACTCGGTCTACGCCCT
CTAGCAGTACACCTAGCTCCCGCCCCGCCTCCCTGGGATACAGTGGAGCTGCAGGGCCCCGCCCCATCAC
CCAGAGTGAGCTGGCCACTGCCCTGGCCCTGGCCAGTACTCCAGAGAGCAGTTCTCATACACCAACTCCT
GGCACCCAGGGCCATTCTTCAGGCACCTCGCCAATGTCCTCTGGTGTCCAGTCAGGGACACCCATCACCA
ACGATCTTTTTAGCCAAGCTCTCCAGCATGCCCTGCAGGCCTCTGGGCAGCCCAGCCTTCAGAGCCAGTG
GCAGCCTCAGCTGCAGCAGTTGCGTGACATGGGCATCCAGGATGACGAACTAAGCCTCCGGGCCCTTCAG
GCCACTGGAGGTGATATCCAAGCAGCCCTGGAACTCATCTTTGCTGGAGGAGCCCCATGAACTTCTTGTA
CCTGAACACCTAGCAAATTGCAGAGGCTGTTCCTGGCAAGAAGCACTTGTGAAGTTGCTTCTAGATTCCC
CACCCAACCCCACCCCAATATATCATATGCTCCCCTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:4912715 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4912715 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:16211 same embryo
 EMAGE:16212 same embryo
 EMAGE:16209 same embryo
 EMAGE:16213 same embryo
 EMAGE:16210 same embryo
 EurExpress:euxassay_017083 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS